SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24500 | AT | Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein | chr4:12658732-12660211 FORWARD LENGTH=319 | SoyBase | E_val: 3.00E-25 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0016604 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear body | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1JH10 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JH10_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6E437 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ACT11D09.5 n=1 Tax=Cucumis melo RepID=Q6E437_CUCME | SoyBase | E_val: 4.00E-28 | ISS |
|
Glyma02g37891 not represented in the dataset |
Glyma02g37891 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g36110 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g215100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g37891.2 sequence type=transcript gene model=Glyma02g37891 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCCCGCTTCTGAACCTAGCCTTCCTTCCTCTGTCTCGAGCTCTCATCCTCCACGGCCCCGTGTTAATGCTTTAATCTGTAACTCTCTTTCCATTCAGAGAACTCCATTCTCGGCTTTCTTCGAAGCGTTGAGCTAAGGGACTTGAGGACTGAAGACAGAATCACTATTTAAGGAGTTGATTGTTAGATGTGATTATTTGAAGTTGGAGATTGGAGACTGGAGTGAGACAGGCTTAAAAGGTTATAGAACTATGCAAAATTGAGAAATCTGATATTGAGTAAGAGGAGAGTTTGGCAACAAGTATACCTGTTATGGAGGATTCAGAGCAAAGGAAGAAAAGGCTGAAACAAATGCGTGTGCAAGCTGACCAAGCTGAAGTTTCTGGTGGCAGGGAAGGTTCTGTGGTGCCCGGTTTTCTCTCAAATCCCCTGATTGAAGCTCCTTCAACTATGCCATCACGGGATACATCATATGCTGCTCCAAGGTTTGACTATTATACTGATCCAATGAGTGCCTTCTCATCTAAAAGGAACAATGCCAGTACCCAGGCTGCACCGGATAATTTCCCTCCTTCAAAATTTGGTGGTCCTCCTATGGCACAATATTCATCACCACATCCAGAATCAAAAAATCCACAGATGACTCCACATCCCATTCAAGCATCGCCAGCAGCATATAGAAACCCAGTTTGGAGTGGACCTGGTGGTCCTGCTCACTATAACTTTCCGTTACATCCATCAAGTGGTGGTACTTATCCAAGTCCTAGATTTGAACCATCGGGTGGTCCATTATATAACACTGCCCAGGGCATAGCTCACCAGCCCAGTTACAGTCCTAATCCTCCTTATCCAGGATACGTGAACAGTCCTAGGCCCAGTTACAGTCCTAATCCCTCTCCAGGATACAGTAACTGCCCTATGCCCAGTTACAGTCCCAATCCTTCTCCAGGATACAGGAACAGTCCTAGCCCTGGTCAAGGGCGAGGCAGGGGTTTCTGGCGCAACACGGGAAGCCCTGTTTCAGGATGGGGTAGTGGACAAGGACCGAATTTTCATGGTCATCGGTCCAACGAAAACACAGTTCATGGTCCAGACCGATTTTACAAGAGGTCCATGGTTGAAGATCCATGGGAGCATTTAGAACCTATTATATGGAAGGCAAATGATGGATATTTAAACACTTCACGTGTACCTCTGAATTCACAACCCTGGATTTCAAAAGCATCAAGTACAAAAGGGGAGGGATCATCTGCTGCTTCTGTCAAGTCCAGTTCCGAACCAAGCCTTGCTGAGTACTTGGCTTCTGCATTCAATGAAGCTGCCAATGATGCAGAAAATGTATGATGATGACAGCTGATCGTTTCATGAAGGGCCCTTCATGATGTTACAGAGGGAAACGAATTTCCAACCAGTGAAAAAAAACTGAATAAATTACAAGTCATTTCATAGATGAATGCCAAGGGGGTCAGCTGTTTGGTGTTACTGTTTGTATTGATACACCAAACATCATGAGAAAATTTTAGGGATGTGTTCGGGTTACTTGGCACGGTTTGATCAGTTGACATCTAATTAATTTTGTACTATCTGAAATACACTGTAAATGTACTAGTGCAGATAAAAAGTCCTTGCATAATTTGACTTAAAGTAGAAACTGCAAAAACTACAATCACATGTTGAGCACAGGTATGGGGTGAAATCACTCACAGTTAGCATTTAATTGGCCGCTAGGGTATTATTGAAGTGCTT >Glyma02g37891.3 sequence type=transcript gene model=Glyma02g37891 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCCCGCTTCTGAACCTAGCCTTCCTTCCTCTGTCTCGAGCTCTCATCCTCCACGGCCCCGTGTTAATGCTTTAATCTGTAACTCTCTTTCCATTCAGAGAACTCCATTCTCGGCTTTCTTCGAAGCGTTGAGCTAAGGGACTTGAGGACTGAAGACAGAATCACTGTTATGGAGGATTCAGAGCAAAGGAAGAAAAGGCTGAAACAAATGCGTGTGCAAGCTGACCAAGCTGAAGTTTCTGGTGGCAGGGAAGGTTCTGTGGTGCCCGGTTTTCTCTCAAATCCCCTGATTGAAGCTCCTTCAACTATGCCATCACGGGATACATCATATGCTGCTCCAAGGTTTGACTATTATACTGATCCAATGAGTGCCTTCTCATCTAAAAGGAACAATGCCAGTACCCAGGCTGCACCGGATAATTTCCCTCCTTCAAAATTTGGTGGTCCTCCTATGGCACAATATTCATCACCACATCCAGAATCAAAAAATCCACAGATGACTCCACATCCCATTCAAGCATCGCCAGCAGCATATAGAAACCCAGTTTGGAGTGGACCTGGTGGTCCTGCTCACTATAACTTTCCGTTACATCCATCAAGTGGTGGTACTTATCCAAGTCCTAGATTTGAACCATCGGGTGGTCCATTATATAACACTGCCCAGGGCATAGCTCACCAGCCCAGTTACAGTCCTAATCCTCCTTATCCAGGATACGTGAACAGTCCTAGGCCCAGTTACAGTCCTAATCCCTCTCCAGGATACAGTAACTGCCCTATGCCCAGTTACAGTCCCAATCCTTCTCCAGGATACAGGAACAGTCCTAGCCCTGGTCAAGGGCGAGGCAGGGGTTTCTGGCGCAACACGGGAAGCCCTGTTTCAGGATGGGGTAGTGGACAAGGACCGAATTTTCATGGTCATCGGTCCAACGAAAACACAGTTCATGGTCCAGACCGATTTTACAAGAGGTCCATGGTTGAAGATCCATGGGAGCATTTAGAACCTATTATATGGAAGGCAAATGATGGATATTTAAACACTTCACGTGTACCTCTGAATTCACAACCCTGGATTTCAAAAGCATCAAGTACAAAAGGGGAGGGATCATCTGCTGCTTCTGTCAAGTCCAGTTCCGAACCAAGCCTTGCTGAGTACTTGGCTTCTGCATTCAATGAAGCTGCCAATGATGCAGAAAATGTATGATGATGACAGCTGATCGTTTCATGAAGGGCCCTTCATGATGTTACAGAGGGAAACGAATTTCCAACCAGTGAAAAAAAACTGAATAAATTACAAGTCATTTCATAGATGAATGCCAAGGGGGTCAGCTGTTTGGTGTTACTGTTTGTATTGATACACCAAACATCATGAGAAAATTTTAGGGATGTGTTCGGGTTACTTGGCACGGTTTGATCAGTTGACATCTAATTAATTTTGTACTATCTGAAATACACTGTAAATGTACTAGTGCAGATAAAAAGTCCTTGCATAATTTGACTTAAAGTAGAAACTGCAAAAACTACAATCACATGTTGAGCACAGGTATGGGGTGAAATCACTCACAGTTAGCATTTAATTGGCCGCTAGGGTATTATTGAAGTGCTT
>Glyma02g37891.1 sequence type=CDS gene model=Glyma02g37891 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGATTCAGAGCAAAGGAAGAAAAGGCTGAAACAAATGCGTGTGCAAGCTGACCAAGCTGAAGTTTCTGGTGGCAGGGAAGGTTCTGTGGTGCCCGGTTTTCTCTCAAATCCCCTGATTGAAGCTCCTTCAACTATGCCATCACGGGATACATCATATGCTGCTCCAAGGTTTGACTATTATACTGATCCAATGAGTGCCTTCTCATCTAAAAGGAACAATGCCAGTACCCAGGCTGCACCGGATAATTTCCCTCCTTCAAAATTTGGTGGTCCTCCTATGGCACAATATTCATCACCACATCCAGAATCAAAAAATCCACAGATGACTCCACATCCCATTCAAGCATCGCCAGCAGCATATAGAAACCCAGTTTGGAGTGGACCTGGTGGTCCTGCTCACTATAACTTTCCGTTACATCCATCAAGTGGTGGTACTTATCCAAGTCCTAGATTTGAACCATCGGGTGGTCCATTATATAACACTGCCCAGGGCATAGCTCACCAGCCCAGTTACAGTCCTAATCCTCCTTATCCAGGATACGTGAACAGTCCTAGGCCCAGTTACAGTCCTAATCCCTCTCCAGGATACAGTAACTGCCCTATGCCCAGTTACAGTCCCAATCCTTCTCCAGGATACAGGAACAGTCCTAGCCCTGGTCAAGGGCGAGGCAGGGGTTTCTGGCGCAACACGGGAAGCCCTGTTTCAGGATGGGGTAGTGGACAAGGACCGAATTTTCATGGTCATCGGTCCAACGAAAACACAGTTCATGGTCCAGACCGATTTTACAAGAGGTCCATGGTTGAAGATCCATGGGAGCATTTAGAACCTATTATATGGAAGGCAAATGATGGATATTTAAACACTTCACGTGTACCTCTGAATTCACAACCCTGGATTTCAAAAGCATCAAGTACAAAAGGGGAGGGATCATCTGCTGCTTCTGTCAAGTCCAGTTCCGAACCAAGCCTTGCTGAGTACTTGGCTTCTGCATTCAATGAAGCTGCCAATGATGCAGAAAATGTATGA >Glyma02g37891.2 sequence type=CDS gene model=Glyma02g37891 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGATTCAGAGCAAAGGAAGAAAAGGCTGAAACAAATGCGTGTGCAAGCTGACCAAGCTGAAGTTTCTGGTGGCAGGGAAGGTTCTGTGGTGCCCGGTTTTCTCTCAAATCCCCTGATTGAAGCTCCTTCAACTATGCCATCACGGGATACATCATATGCTGCTCCAAGGTTTGACTATTATACTGATCCAATGAGTGCCTTCTCATCTAAAAGGAACAATGCCAGTACCCAGGCTGCACCGGATAATTTCCCTCCTTCAAAATTTGGTGGTCCTCCTATGGCACAATATTCATCACCACATCCAGAATCAAAAAATCCACAGATGACTCCACATCCCATTCAAGCATCGCCAGCAGCATATAGAAACCCAGTTTGGAGTGGACCTGGTGGTCCTGCTCACTATAACTTTCCGTTACATCCATCAAGTGGTGGTACTTATCCAAGTCCTAGATTTGAACCATCGGGTGGTCCATTATATAACACTGCCCAGGGCATAGCTCACCAGCCCAGTTACAGTCCTAATCCTCCTTATCCAGGATACGTGAACAGTCCTAGGCCCAGTTACAGTCCTAATCCCTCTCCAGGATACAGTAACTGCCCTATGCCCAGTTACAGTCCCAATCCTTCTCCAGGATACAGGAACAGTCCTAGCCCTGGTCAAGGGCGAGGCAGGGGTTTCTGGCGCAACACGGGAAGCCCTGTTTCAGGATGGGGTAGTGGACAAGGACCGAATTTTCATGGTCATCGGTCCAACGAAAACACAGTTCATGGTCCAGACCGATTTTACAAGAGGTCCATGGTTGAAGATCCATGGGAGCATTTAGAACCTATTATATGGAAGGCAAATGATGGATATTTAAACACTTCACGTGTACCTCTGAATTCACAACCCTGGATTTCAAAAGCATCAAGTACAAAAGGGGAGGGATCATCTGCTGCTTCTGTCAAGTCCAGTTCCGAACCAAGCCTTGCTGAGTACTTGGCTTCTGCATTCAATGAAGCTGCCAATGATGCAGAAAATGTATGA >Glyma02g37891.3 sequence type=CDS gene model=Glyma02g37891 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGATTCAGAGCAAAGGAAGAAAAGGCTGAAACAAATGCGTGTGCAAGCTGACCAAGCTGAAGTTTCTGGTGGCAGGGAAGGTTCTGTGGTGCCCGGTTTTCTCTCAAATCCCCTGATTGAAGCTCCTTCAACTATGCCATCACGGGATACATCATATGCTGCTCCAAGGTTTGACTATTATACTGATCCAATGAGTGCCTTCTCATCTAAAAGGAACAATGCCAGTACCCAGGCTGCACCGGATAATTTCCCTCCTTCAAAATTTGGTGGTCCTCCTATGGCACAATATTCATCACCACATCCAGAATCAAAAAATCCACAGATGACTCCACATCCCATTCAAGCATCGCCAGCAGCATATAGAAACCCAGTTTGGAGTGGACCTGGTGGTCCTGCTCACTATAACTTTCCGTTACATCCATCAAGTGGTGGTACTTATCCAAGTCCTAGATTTGAACCATCGGGTGGTCCATTATATAACACTGCCCAGGGCATAGCTCACCAGCCCAGTTACAGTCCTAATCCTCCTTATCCAGGATACGTGAACAGTCCTAGGCCCAGTTACAGTCCTAATCCCTCTCCAGGATACAGTAACTGCCCTATGCCCAGTTACAGTCCCAATCCTTCTCCAGGATACAGGAACAGTCCTAGCCCTGGTCAAGGGCGAGGCAGGGGTTTCTGGCGCAACACGGGAAGCCCTGTTTCAGGATGGGGTAGTGGACAAGGACCGAATTTTCATGGTCATCGGTCCAACGAAAACACAGTTCATGGTCCAGACCGATTTTACAAGAGGTCCATGGTTGAAGATCCATGGGAGCATTTAGAACCTATTATATGGAAGGCAAATGATGGATATTTAAACACTTCACGTGTACCTCTGAATTCACAACCCTGGATTTCAAAAGCATCAAGTACAAAAGGGGAGGGATCATCTGCTGCTTCTGTCAAGTCCAGTTCCGAACCAAGCCTTGCTGAGTACTTGGCTTCTGCATTCAATGAAGCTGCCAATGATGCAGAAAATGTATGA
>Glyma02g37891.1 sequence type=predicted peptide gene model=Glyma02g37891 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDSEQRKKRLKQMRVQADQAEVSGGREGSVVPGFLSNPLIEAPSTMPSRDTSYAAPRFDYYTDPMSAFSSKRNNASTQAAPDNFPPSKFGGPPMAQYSSPHPESKNPQMTPHPIQASPAAYRNPVWSGPGGPAHYNFPLHPSSGGTYPSPRFEPSGGPLYNTAQGIAHQPSYSPNPPYPGYVNSPRPSYSPNPSPGYSNCPMPSYSPNPSPGYRNSPSPGQGRGRGFWRNTGSPVSGWGSGQGPNFHGHRSNENTVHGPDRFYKRSMVEDPWEHLEPIIWKANDGYLNTSRVPLNSQPWISKASSTKGEGSSAASVKSSSEPSLAEYLASAFNEAANDAENV* >Glyma02g37891.2 sequence type=predicted peptide gene model=Glyma02g37891 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDSEQRKKRLKQMRVQADQAEVSGGREGSVVPGFLSNPLIEAPSTMPSRDTSYAAPRFDYYTDPMSAFSSKRNNASTQAAPDNFPPSKFGGPPMAQYSSPHPESKNPQMTPHPIQASPAAYRNPVWSGPGGPAHYNFPLHPSSGGTYPSPRFEPSGGPLYNTAQGIAHQPSYSPNPPYPGYVNSPRPSYSPNPSPGYSNCPMPSYSPNPSPGYRNSPSPGQGRGRGFWRNTGSPVSGWGSGQGPNFHGHRSNENTVHGPDRFYKRSMVEDPWEHLEPIIWKANDGYLNTSRVPLNSQPWISKASSTKGEGSSAASVKSSSEPSLAEYLASAFNEAANDAENV* >Glyma02g37891.3 sequence type=predicted peptide gene model=Glyma02g37891 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEDSEQRKKRLKQMRVQADQAEVSGGREGSVVPGFLSNPLIEAPSTMPSRDTSYAAPRFDYYTDPMSAFSSKRNNASTQAAPDNFPPSKFGGPPMAQYSSPHPESKNPQMTPHPIQASPAAYRNPVWSGPGGPAHYNFPLHPSSGGTYPSPRFEPSGGPLYNTAQGIAHQPSYSPNPPYPGYVNSPRPSYSPNPSPGYSNCPMPSYSPNPSPGYRNSPSPGQGRGRGFWRNTGSPVSGWGSGQGPNFHGHRSNENTVHGPDRFYKRSMVEDPWEHLEPIIWKANDGYLNTSRVPLNSQPWISKASSTKGEGSSAASVKSSSEPSLAEYLASAFNEAANDAENV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
