Report for Sequence Feature Glyma02g37880
Feature Type: gene_model
Chromosome: Gm02
Start: 43186410
stop: 43191645
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g37880
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G30200 AT
Annotation by Michelle Graham. TAIR10: vernalization5/VIN3-like | chr4:14786852-14790070 REVERSE LENGTH=702
SoyBase E_val: 7.00E-108 ISS
GO:0007155 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell adhesion
SoyBase N/A ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0010090 GO-bp
Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis
SoyBase N/A ISS
GO:0010228 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem
SoyBase N/A ISS
GO:0016926 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein desumoylation
SoyBase N/A ISS
GO:0045010 GO-bp
Annotation by Michelle Graham. GO Biological Process: actin nucleation
SoyBase N/A ISS
GO:0048587 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of short-day photoperiodism, flowering
SoyBase N/A ISS
GO:0048765 GO-bp
Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation
SoyBase N/A ISS
GO:0050665 GO-bp
Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process
SoyBase N/A ISS
GO:0071555 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall organization
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0031519 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: PcG protein complex
SoyBase N/A ISS
GO:0035064 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methylated histone residue binding
SoyBase N/A ISS
PTHR21736 Panther
VERNALIZATION-INSENSITIVE PROTEIN 3
JGI ISS
PTHR21736:SF13 Panther
VERNALIZATION-INSENSITIVE PROTEIN 3
JGI ISS
PF07227 PFAM
Protein of unknown function (DUF1423)
JGI ISS
UniRef100_G7JYE8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein VERNALIZATION INSENSITIVE n=1 Tax=Medicago truncatula RepID=G7JYE8_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI000233742C UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233742C related cluster n=1 Tax=unknown RepID=UPI000233742C
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g37880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g37880
Paralog Evidence Comments
Glyma14g36100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g37880 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g215000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g37880
Coding sequences of Glyma02g37880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g37880.1 sequence type=CDS gene model=Glyma02g37880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGCGAAGAAGAGAACAAGGGTTGTGCTTTTCTGGGAACCAACTCCACCTACTCAGGTTTTCTTCTTGACCCTTCAAAATGTGATATGCTGAGTTTGCCAGACAAGCAAAGACTAGTCCATGAGATTGCTCGACAGTCAAAAGATGCCTCAAGTATGCTTCAGTCATTTACACGTAGGGAACTTCTAGAAATAATCTGTGCTGAATTAGGCAAAGAGAGGAAGTACACAGGATATACCAAGAGTCAAATGATAGAACATCTTCTGAAGATAATTTCTAAGAACTCCAACTTGCACATCAATGGAAATACACCTCCTCAATCTCCTGCCAAAAGTTGCATTGGAACTAAAAGGAAAAAGAAACCTGCGACTCAGGATTTACATCATGCTCCTCTAGGGAACAGTAAAGAAACAGTGAAAACCTTTTTGTGTCAAAATGTTGCTTGCAAAGCTAAATTGAATCCAGAAGATTCTTTTTGCAAGAGATGTTCTTGTTGTATATGTCATCATTATGATGATAACAAGGATCCTAGTTTGTGGTTGACCTGCAGCTCTGATCTTCCCAATGAGGAGTCATGTGGAATGTCCTGTCATTTGCAATGTGCTTTGAGTAATCAAATGTCTGGCATTTTGAAGGGTAGTTGTGGTGGTGTTAAGTTGGATGGAACCTTCTGTTGTGTTTCCTGTGGAAAAATTAATGAACTAATGAAGACATGGCGAAAGCAATTGTTGGTTGCCAAAGAAGCAAGAAGAACGGATATACTCTCTTTGCGATTATCCCTGGCCCACAGAATTCTTTTAGGAACAGAAGTCTACAAGGAAGTGCAGAAAATTGTAGAAACTGCTCTCAAATTACTGGAGAATGAAGTGGGATCACTATATGCTAGTATGACGCGTGGAATTGTGAGCAGGCTTTCATGTGGTGCTGAGGTTCAGAGATTGTGCACTACTGCACTTGAATGTTTTGATTCAAAGTTTTCTGTCCTTTTCTCTATTTGTTTGGAAAACAAAGATGCACCAACTTGCTCAATTCGTTTTGAAGAGTGTCTTCCTACATCAGTGGTTATTGTGCTAGAGTACAAAGACAAACTTTTGCAGAACTTTCTAGGCTGCAGGCTTTGGCACCGACTATCAACAATGGACTACCCTGAACAACCCACCTTCATTGTCTTGAGGCCTGAGAAAAGATTCAAGTTAGAAAACCTCCATCCTTCAACTGAATACTTTTGCAAGGCTTCTCTGTTCAGCAGCACAGGGATTTTGGGTGCTGCAGAAGCTACATGGGTGACACCTTGTGAACCAACTAATCCTTCAAAAGTTATTAATTGTGGTGGGAATAGATTTAGATGGTCCCCTCAAAGACCCTCAGGTACAGGAGTGAACATGTGTGCACAGAACCGAATAACTGCTGAAATTCATCCCACAGAATCTGCCAACTCCGAAATGAAGTTATCATCCGGAGAACATCCCGGGAAGAAACACATCATTTTGAACATCAGGAGCAGGTTTGAAGAGTTCCTCTCCAAGCCTCAACCAGTAGAGCCTTTTTCATATAAAAATCTTGCTGCAGTTTCACCTTCAACACCTTCTAAATCCTATGAAATGAGGCAAATTCCTGGCTTGAATTCTAGGAAGTTCTCGAAGGAGAACGATTACGAGTATTCCGTCAGGGTAGTCAAATGGTTAGAGCATCAAGGGCATATAGATGAAATCTTCAGAGTAAGGTTTCTCACTTGGTTCAGCCTCAAGGCTACTCAGCAGGAGAGAAGGGTGGTTAGTGCTTTTGTTGATGCATTGATTGATGACCCAGCAAGCTTAGCAGACCAGCTCATACACACTTTCAGCGACGAGATATGTTGCGAGCCAAAATCTTAG
Predicted protein sequences of Glyma02g37880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g37880.1 sequence type=predicted peptide gene model=Glyma02g37880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSEEENKGCAFLGTNSTYSGFLLDPSKCDMLSLPDKQRLVHEIARQSKDASSMLQSFTRRELLEIICAELGKERKYTGYTKSQMIEHLLKIISKNSNLHINGNTPPQSPAKSCIGTKRKKKPATQDLHHAPLGNSKETVKTFLCQNVACKAKLNPEDSFCKRCSCCICHHYDDNKDPSLWLTCSSDLPNEESCGMSCHLQCALSNQMSGILKGSCGGVKLDGTFCCVSCGKINELMKTWRKQLLVAKEARRTDILSLRLSLAHRILLGTEVYKEVQKIVETALKLLENEVGSLYASMTRGIVSRLSCGAEVQRLCTTALECFDSKFSVLFSICLENKDAPTCSIRFEECLPTSVVIVLEYKDKLLQNFLGCRLWHRLSTMDYPEQPTFIVLRPEKRFKLENLHPSTEYFCKASLFSSTGILGAAEATWVTPCEPTNPSKVINCGGNRFRWSPQRPSGTGVNMCAQNRITAEIHPTESANSEMKLSSGEHPGKKHIILNIRSRFEEFLSKPQPVEPFSYKNLAAVSPSTPSKSYEMRQIPGLNSRKFSKENDYEYSVRVVKWLEHQGHIDEIFRVRFLTWFSLKATQQERRVVSAFVDALIDDPASLADQLIHTFSDEICCEPKS*