SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24520 | AT | Annotation by Michelle Graham. TAIR10: P450 reductase 1 | chr4:12663065-12667066 REVERSE LENGTH=692 | SoyBase | E_val: 0 | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009698 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003958 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADPH-hemoprotein reductase activity | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0010181 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: FMN binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG1158 | KOG | NADP/FAD dependent oxidoreductase | JGI | ISS | |
| PTHR19384 | Panther | NADPH FLAVIN OXIDOREDUCTASE | JGI | ISS | |
| PTHR19384:SF17 | Panther | NADPH-CYTOCHROME P450 REDUCTASE | JGI | ISS | |
| PF00175 | PFAM | Oxidoreductase NAD-binding domain | JGI | ISS | |
| PF00258 | PFAM | Flavodoxin | JGI | ISS | |
| PF00667 | PFAM | FAD binding domain | JGI | ISS | |
| UniRef100_Q8GUS1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NADPH--cytochrome P450 reductase n=1 Tax=Glycine max RepID=Q8GUS1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8GUS1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: NADPH--cytochrome P450 reductase n=1 Tax=Glycine max RepID=Q8GUS1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g37850 not represented in the dataset |
Glyma02g37850 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g36070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g214700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g37850.2 sequence type=CDS gene model=Glyma02g37850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCGAATTCCGAGCTGGTGCGAACCGTTGTTGAGTCGGCGCTGGGCGTTTCGGTTTCCGATTCGGTGCTGGAAATCTTCGGATCAGAGCAAGGACCGAAGCCGCTCGCGGTGCCGAAGCTTCTGGTGAAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGCTGGTTCGGGGAAGACCAGGGTTGCCATTTTCTTCGGAATTCAAACCGGTACCGCTGAGGGCTTTGCCAAGGCTTTGGTAGAGGAGATCAAGGCTAGGTATGAAAAAACAGCTGTCAAAGTTGTTGACCTGGATGACTATACAATGGATGATGATCAATATGAAGAGAAGCTGAAGAAAGAGTCAGTTGCATTTTTCATATATGGAGATGGAAAGCCAACTGACAATGCTGCAAGATTTCACAAATGGTTTACTGAGGTTAAAGACGACAGGGGTACCTGGCTTCAACAGCTCACATATGGTGTTTTTGGCTTAGGTAACCAGCAGTATGATCATTTTAATAAGATAGGTAAAATAGTTAATGAAGAACTTAGTGAACAAGGTGCTAAGCGTCTTGTTCCATTGGGGCTAGGTGATGATGATCAATCCATTGAGGATGATTTTGTTGCATGGAAGGAATCTCTATGGCCTGAGTTGGATCAGTTGCTCCGAGATGAGGATGATGTAAATACTGTATCTACTGTTTATAAGGCTGCTATTCCTGAATATCGAGTGGTTATTCATGATTCCACTGTCACATCTTGCAATGATAATCAATTAAATGTAGCAAATGGTAATGCTGTGTTTGATATTCACCATCCTTGCAGGGTTAATGTTGCTGTTCAAAGAGAACTTCACAAATTTGAGTCTGATCGTTCTTGCATACATTTGGAGTTTGACATATCCGGGACTGGCATAATATATGAAACTGCTGACAATGTGGGTGTTTTTGCTGAAAACGATGATGAAGCTGTTGAAGAAGCTGGAAAGTTGCTGGGTCAGGATTTGGATTTGGTGTTTTCCCTTCTCACTGATAATGAGGATGGTACTCCTCTTGGAGGTTCTCTGCCTCCTCCTTTTCTTGGCCCTTGCACACTGGGCTTTGTTTTGGCACATTATGCAGATCTCTTGAACCCTCCACGCAAGGCTGCTTTAGTGGCTCTGGCTGCACATACTTCAGAACCAAGTGAAGCAGATAGATTAACGTTCCCTTTCATCTCCTCAGGGGGGGAAGGTGAAATTTTGCTAGAGTTATACTGTTTCTGTTTTCAAGTTGAGACTTTTCTATATTTTCCTCTGTTAATAATAGTTTTGAAAATTTTTGTTTTCCAGGATGAGTACTCCAAATGGCTGCTGGGAAGTCAGAGAAGTCTCCTTGAGGTAATGGCTGAGTTCCCCTCAGCAAAACCACCGCTTGGTGTGTTTTTTGCTGCAGTAGCCCCTCACTTACAACCTTGTTATTATTCTATTTCATCCTCGCCTAGGTTTTCCTCGCAAAGGGTACATGTAACTTGTGCCTTGGTATGTGGTCCAACTCCTACAGGAAGAATTCACAAAGGAGTATGTTCAACCTGGATGAAGAATGCCATTCCCTTAGAGAAAAGCTGTGACTGTAGTTGGGCTCCTATTTTTATCAGAACATCAAACTTCAAGTTACCAGCTGATCATTCCGTTGCTATTATTATGGTTGGTCCTGGTACAGGCTTGGCACCTTTCAGGGGATTTTTACAGGAAAGATTGGTCCTCAAAGAGGATGGCGTTCAACTTGGTCCTGCATTACTCTTCTTTGGATGTAGGAATCGACAAATGGATTTTATTTATGAGGATGAGCTAAAGAATTTTGTGGAACAAGGTGCTTTGTCAGAGTTGATAGTCGCATTCTCGAGAGAGGGACCTGAAAAGGAGTATGTTCAACACAAGATGATGGATAAAGGCATGGCCAGAGATGTTCATCGGACTCTTCTTACCATTGTCCAGCAGCAGGAAAATGTGGACCCTTCAAATGCAGAGGCTATAGTAAAAAAATTCCAGATGGATGGACGTTATCTTAGAGATGTCTGGTAA
>Glyma02g37850.2 sequence type=predicted peptide gene model=Glyma02g37850 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASNSELVRTVVESALGVSVSDSVLEIFGSEQGPKPLAVPKLLVKEEEEEEEEEEDAGSGKTRVAIFFGIQTGTAEGFAKALVEEIKARYEKTAVKVVDLDDYTMDDDQYEEKLKKESVAFFIYGDGKPTDNAARFHKWFTEVKDDRGTWLQQLTYGVFGLGNQQYDHFNKIGKIVNEELSEQGAKRLVPLGLGDDDQSIEDDFVAWKESLWPELDQLLRDEDDVNTVSTVYKAAIPEYRVVIHDSTVTSCNDNQLNVANGNAVFDIHHPCRVNVAVQRELHKFESDRSCIHLEFDISGTGIIYETADNVGVFAENDDEAVEEAGKLLGQDLDLVFSLLTDNEDGTPLGGSLPPPFLGPCTLGFVLAHYADLLNPPRKAALVALAAHTSEPSEADRLTFPFISSGGEGEILLELYCFCFQVETFLYFPLLIIVLKIFVFQDEYSKWLLGSQRSLLEVMAEFPSAKPPLGVFFAAVAPHLQPCYYSISSSPRFSSQRVHVTCALVCGPTPTGRIHKGVCSTWMKNAIPLEKSCDCSWAPIFIRTSNFKLPADHSVAIIMVGPGTGLAPFRGFLQERLVLKEDGVQLGPALLFFGCRNRQMDFIYEDELKNFVEQGALSELIVAFSREGPEKEYVQHKMMDKGMARDVHRTLLTIVQQQENVDPSNAEAIVKKFQMDGRYLRDVW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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