SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33580 | AT | Annotation by Michelle Graham. TAIR10: beta carbonic anhydrase 5 | chr4:16139406-16141363 FORWARD LENGTH=301 | SoyBase | E_val: 2.00E-98 | ISS |
| GO:0015976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbon utilization | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004089 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbonate dehydratase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1578 | KOG | Predicted carbonic anhydrase involved in protection against oxidative damage | JGI | ISS | |
| PTHR11002 | Panther | CARBONIC ANHYDRASE | JGI | ISS | |
| PTHR11002:SF1 | Panther | CARBONIC ANHYDRASE-RELATED | JGI | ISS | |
| PF00484 | PFAM | Carbonic anhydrase | JGI | ISS | |
| UniRef100_I1JGZ6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Carbonic anhydrase n=1 Tax=Glycine max RepID=I1JGZ6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JGZ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Carbonic anhydrase n=1 Tax=Glycine max RepID=I1JGZ6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g37710 not represented in the dataset |
Glyma02g37710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g36000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g213700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g37710.2 sequence type=transcript gene model=Glyma02g37710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCTTGAGTATATTATATTAAATATTTAAAGAGATTTTTTTTTTCATTTTATAGTCATCATATCCCGATTCATATATGATTGCTTTCATGGTTTTAGACAATAAAATAAACATTTAACCATAAATTTATAATACATCAATTAATTTAATTATAATAAAATATAAGAATAAATATGGCATGCGTTGTACTTCAAAGGGAGTTTGCATTTTGTAGTCACTAGTCACAATTTGTTGGAGGAGAAGAGATGGTTTGGCCAATTAGGTCCAGAATAAGTTCTCTTCTCTGTTCTAAGGCACCTTTAGTTGGTTCATACATCTATGACTCATGTGGGTGCTTACGCTTTTCTGCTCCAACCAGCTCCTCCATAACAAGGCATTGGCCAAAAATTATGGATTGGGTACAAATGGACCGTTGCCGTGCAGCAGCATCGTTACCTTCGATCAAAGAGAAACAACCAGAAAGTCATAGTAATCGTGTCAGACTCGGTCAAGAAATCAAAGGTCTTGATGAAGGGAATATGGCTGAAATTGATAGCTATCAAAACTTGTTTGGTTTGATGAAACAGAGGTTTCTGAGTTTCAAGAGCCAAAAATATATAAAAGAGTTGGAGCATTTTGAAGCTCTTGCTGAAGCTCAATTTCCTAAGTTTATGGTGATTGCTTGTGCAGACTCTAGGGTATGCCCCTCTAACATATTAGGATTCCAACCTGGAGAAGTCTTTATGATACGTAACATTGCCAATCTTGTTCCTGTGATGAAGAATGGACCATCAGAATGTAATGCTGCTCTTCAGTTTGCAGTAACTACTCTTCAGGTTGAGAATATATTAGTCATTGGTCATAGTAGCTGCGCTGGAATTGAAGCTTTGATGAATATGCAAGAAGATGCAGAATCAAGAAACTTCATACACAAGTGGGTTGCCAATGGAAAACTTGCCAAACAAAGGACAAAAGCTGCCACAGCTCATCTTAGCTTTGATCAGCAATGCAAATTCTGTGAGAAGGTATCCATCATGTAACTGCATTATGCTCAGCCAAATTATTAGTGTGTTTGGATTAGCTTCATGGTGAGAAATAATCAGTTAATTTTTCATGATAGAGATAAAGCAACAAATAGTTCTATTTTTTCATGGTATCACAGAGATTTTGTGGGAGTAGAATTGATTCTTGTATATTATCTAAACTCACTATATGTAAGGTTGCCACTAAGAACTTGACTTGAATACTGTGAAACAAAATCGGTTGTACTTAGAATAGTTCTGTGGCACCAAGTAAATTCTAGTTTCTGAAGGCAATTAAGGTGATGCTCATTCAATTTTTGACAGGAATCTATTAACCAATCATTATTGAACTTGCTCAGCTATCCTTGGATACAAGATAGAGTGAGAAAAGAGTTGCTTTCTCTACATGGAGGATATTATAATTTCTCTAATTGCTCTTTTGAGAAATGGACCCTTGATTTTAAACAATGCAATGTTGAAGAAGGAAGCAGTTATGTTGTCAAAGAACAAGAATTCTGGTGCTGACTGTTGCTATACCAGGAAGCTTGAAACAACATTCATGACAATGAAGTCAAATTCAATTTGAGTATACATTATACAACTATATAAATCTTATGTTGATGTTAGTCTCTGCCTGAAAATGAATCAAAGAAATTAAATGATTGATTCTGAATGCAACTTTGTCATGATTTAAGGAAGCTACGGTATAAATTATTGTTTTAGGAAGCAACACAAATCAGAAGAAAAATTCCCCTCTATATATACTATGCATTAGAGGGCTTGGCATTTCTCTTTCTTTACATCTGGCTTTTCATTACCATTGTTCCCATTCAGATACCATACAAAATTCATATATATAAAACGAAATTATAAAATTGATTTGATGGTTGATG
>Glyma02g37710.1 sequence type=CDS gene model=Glyma02g37710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTGGCCAATTAGGTCCAGAATAAGTTCTCTTCTCTGTTCTAAGGCACCTTTAGTTGGTTCATACATCTATGACTCATGTGGGTGCTTACGCTTTTCTGCTCCAACCAGCTCCTCCATAACAAGGCATTGGCCAAAAATTATGGATTGGGTACAAATGGACCGTTGCCGTGCAGCAGCATCGTTACCTTCGATCAAAGAGAAACAACCAGAAAGTCATAGTAATCGTGTCAGACTCGGTCAAGAAATCAAAGGTCTTGATGAAGGGAATATGGCTGAAATTGATAGCTATCAAAACTTGTTTGGTTTGATGAAACAGAGGTTTCTGAGTTTCAAGAGCCAAAAATATATAAAAGAGTTGGAGCATTTTGAAGCTCTTGCTGAAGCTCAATTTCCTAAGTTTATGGTGATTGCTTGTGCAGACTCTAGGGTATGCCCCTCTAACATATTAGGATTCCAACCTGGAGAAGTCTTTATGATACGTAACATTGCCAATCTTGTTCCTGTGATGAAGAATGGACCATCAGAATGTAATGCTGCTCTTCAGTTTGCAGTAACTACTCTTCAGGTTGAGAATATATTAGTCATTGGTCATAGTAGCTGCGCTGGAATTGAAGCTTTGATGAATATGCAAGAAGATGCAGAATCAAGAAACTTCATACACAAGTGGGTTGCCAATGGAAAACTTGCCAAACAAAGGACAAAAGCTGCCACAGCTCATCTTAGCTTTGATCAGCAATGCAAATTCTGTGAGAAGGAATCTATTAACCAATCATTATTGAACTTGCTCAGCTATCCTTGGATACAAGATAGAGTGAGAAAAGAGTTGCTTTCTCTACATGGAGGATATTATAATTTCTCTAATTGCTCTTTTGAGAAATGGACCCTTGATTTTAAACAATGCAATGTTGAAGAAGGAAGCAGTTATGTTGTCAAAGAACAAGAATTCTGGTGCTGA >Glyma02g37710.2 sequence type=CDS gene model=Glyma02g37710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTGGCCAATTAGGTCCAGAATAAGTTCTCTTCTCTGTTCTAAGGCACCTTTAGTTGGTTCATACATCTATGACTCATGTGGGTGCTTACGCTTTTCTGCTCCAACCAGCTCCTCCATAACAAGGCATTGGCCAAAAATTATGGATTGGGTACAAATGGACCGTTGCCGTGCAGCAGCATCGTTACCTTCGATCAAAGAGAAACAACCAGAAAGTCATAGTAATCGTGTCAGACTCGGTCAAGAAATCAAAGGTCTTGATGAAGGGAATATGGCTGAAATTGATAGCTATCAAAACTTGTTTGGTTTGATGAAACAGAGGTTTCTGAGTTTCAAGAGCCAAAAATATATAAAAGAGTTGGAGCATTTTGAAGCTCTTGCTGAAGCTCAATTTCCTAAGTTTATGGTGATTGCTTGTGCAGACTCTAGGGTATGCCCCTCTAACATATTAGGATTCCAACCTGGAGAAGTCTTTATGATACGTAACATTGCCAATCTTGTTCCTGTGATGAAGAATGGACCATCAGAATGTAATGCTGCTCTTCAGTTTGCAGTAACTACTCTTCAGGTTGAGAATATATTAGTCATTGGTCATAGTAGCTGCGCTGGAATTGAAGCTTTGATGAATATGCAAGAAGATGCAGAATCAAGAAACTTCATACACAAGTGGGTTGCCAATGGAAAACTTGCCAAACAAAGGACAAAAGCTGCCACAGCTCATCTTAGCTTTGATCAGCAATGCAAATTCTGTGAGAAGGTATCCATCATGTAA
>Glyma02g37710.1 sequence type=predicted peptide gene model=Glyma02g37710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVWPIRSRISSLLCSKAPLVGSYIYDSCGCLRFSAPTSSSITRHWPKIMDWVQMDRCRAAASLPSIKEKQPESHSNRVRLGQEIKGLDEGNMAEIDSYQNLFGLMKQRFLSFKSQKYIKELEHFEALAEAQFPKFMVIACADSRVCPSNILGFQPGEVFMIRNIANLVPVMKNGPSECNAALQFAVTTLQVENILVIGHSSCAGIEALMNMQEDAESRNFIHKWVANGKLAKQRTKAATAHLSFDQQCKFCEKESINQSLLNLLSYPWIQDRVRKELLSLHGGYYNFSNCSFEKWTLDFKQCNVEEGSSYVVKEQEFWC* >Glyma02g37710.2 sequence type=predicted peptide gene model=Glyma02g37710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVWPIRSRISSLLCSKAPLVGSYIYDSCGCLRFSAPTSSSITRHWPKIMDWVQMDRCRAAASLPSIKEKQPESHSNRVRLGQEIKGLDEGNMAEIDSYQNLFGLMKQRFLSFKSQKYIKELEHFEALAEAQFPKFMVIACADSRVCPSNILGFQPGEVFMIRNIANLVPVMKNGPSECNAALQFAVTTLQVENILVIGHSSCAGIEALMNMQEDAESRNFIHKWVANGKLAKQRTKAATAHLSFDQQCKFCEKVSIM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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