SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09740 | AT | Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein | chr1:3154603-3155834 FORWARD LENGTH=171 | SoyBase | E_val: 2.00E-53 | ISS |
| GO:0002238 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin | SoyBase | N/A | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF00582 | PFAM | Universal stress protein family | JGI | ISS | |
| UniRef100_I1MAZ6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAZ6_SOYBN | SoyBase | E_val: 6.00E-89 | ISS |
| UniRef100_Q9SWV2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ER6 protein (Fragment) n=1 Tax=Solanum lycopersicum RepID=Q9SWV2_SOLLC | SoyBase | E_val: 5.00E-59 | ISS |
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Glyma02g37620 not represented in the dataset |
Glyma02g37620 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g213100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g37620.3 sequence type=transcript gene model=Glyma02g37620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATCAAAGCGACCCGTAGCTATGCACGGTTTAACAACAAGTAGTTTGATAAAGATAAACATCGAGTCAAATACATGTCCGAATTGAATAGGAGCAAACAAAGTCAAAGAAAGAAAAGAAAGAGAAAAAAAATCAGCAATCATCATCTGAAGCGAGAAGCCAACACGACAGACACAAGTGAGAAACCAAACCAAAGCAGGTAGCGATGTCGAGTGGTGGAAACCTTAGTTGCGTGTTGGTAGCTGTGGATGGAAGCGAGGAAAGCATGAACGCGCTGCGTTGGGCACTGAACAACCTCAAGCTCCGATCCCCTACACTCGATTCCACCGGTGCTCCCTCCTTCATCATCTTCCACGTCCAATCCCCGCCCTCCATCGCCACTGGCCTCCATCCCGGTGCCATCCCCTTCGGTGGTCCCAGTGATATCGAAGTTCCTGCTTTCACTGCAGCCATTGAAGCTCACCAGAAGCGCATCACCAACGCCGTACTCGACCACGTCCTCGGAATCTGCTCCGAATTCAACCTAACCAGTAAGGGCAGAACCCATGTCCTTGTTGGAGATCCAAAGGAGAAGATTTGTGAAGCTGTGCAGGATTTGCATGCTGATGTGCTTGTGATGGGGTACATACTTTATAGTTATTTTTTTATCAATAAATATTAACTTATTAGTTTTATTAGAAATGTTAGTGGGGGATTCCAATCCTTTCTTAGCTACCGAGCAAACTTTATATCTCCGGTTATACTTTATTGTAGTATGCATGATTTTGGCAGCACATATCACACACAAAAAAATAAAGGCTTGATAAACAACCTGGACAAGTATTCCCTTTTTGAGAATGTTAACAAGTGCTAGGACATTGTGGACCTATTGTTATACTGGGGAAAAACCTGGAGTTTTCAGACTTCAATGCCATCATGCCTTTCCCAATAAAATGTTTCCAAATTTGTTGGCAATATATGAATTGTGATCCTAGTAGATGACAATCGTAGTCCATATCAGAGAAGAGATGTGATTAGAAACCGATGCCAAACATTAGTGATGTGATGATAAAGTTATAAAGACTTTCAATACACAACCAACGTCTATTATCATTATTACTCCTTTATATGCAGATATTTGTTTTTTGAGTTTATACAATGTTGTAGACAAATGTTGCATTACTATTGCTCCCTGGTCAGAGCCAGTTCTAGTTGTGATTGTGATATGCAACAAACTTTCCATTCGTCATGTACAAAATTTCAAATTGAGAATGCAGCTAGTGTTGGCGGCAGTGTGTCTTATTTTTGCATTATCGACAGAGTGTCCAGCTTAAATAATTTTTTATATGAT
>Glyma02g37620.2 sequence type=CDS gene model=Glyma02g37620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGAGTGGTGGAAACCTTAGTTGCGTGTTGGTAGCTGTGGATGGAAGCGAGGAAAGCATGAACGCGCTGCGTTGGGCACTGAACAACCTCAAGCTCCGATCCCCTACACTCGATTCCACCGGTGCTCCCTCCTTCATCATCTTCCACGTCCAATCCCCGCCCTCCATCGCCACTGGCCTCCATCCCGGTGCCATCCCCTTCGGTGGTCCCAGTGATATCGAAGTTCCTGCTTTCACTGCAGCCATTGAAGCTCACCAGAAGCGCATCACCAACGCCGTACTCGACCACGTCCTCGGAATCTGCTCCGAATTCAACCTAACCAGTAAGGGCAGAACCCATGTCCTTGTTGGAGATCCAAAGGAGAAGATTTGTGAAGCTGTGCAGGATTTGCATGCTGATGTGCTTGTGATGGGTATGCATGATTTTGGCAGCACATATCACACACAAAAAAATAAAGGCTTGATAAACAACCTGGACAAGTATTCCCTTTTTGAGAATGTTAACAAGTGCTAG >Glyma02g37620.3 sequence type=CDS gene model=Glyma02g37620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGAGTGGTGGAAACCTTAGTTGCGTGTTGGTAGCTGTGGATGGAAGCGAGGAAAGCATGAACGCGCTGCGTTGGGCACTGAACAACCTCAAGCTCCGATCCCCTACACTCGATTCCACCGGTGCTCCCTCCTTCATCATCTTCCACGTCCAATCCCCGCCCTCCATCGCCACTGGCCTCCATCCCGGTGCCATCCCCTTCGGTGGTCCCAGTGATATCGAAGTTCCTGCTTTCACTGCAGCCATTGAAGCTCACCAGAAGCGCATCACCAACGCCGTACTCGACCACGTCCTCGGAATCTGCTCCGAATTCAACCTAACCAGTAAGGGCAGAACCCATGTCCTTGTTGGAGATCCAAAGGAGAAGATTTGTGAAGCTGTGCAGGATTTGCATGCTGATGTGCTTGTGATGGGGTACATACTTTATAGTTATTTTTTTATCAATAAATATTAA
>Glyma02g37620.2 sequence type=predicted peptide gene model=Glyma02g37620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSGGNLSCVLVAVDGSEESMNALRWALNNLKLRSPTLDSTGAPSFIIFHVQSPPSIATGLHPGAIPFGGPSDIEVPAFTAAIEAHQKRITNAVLDHVLGICSEFNLTSKGRTHVLVGDPKEKICEAVQDLHADVLVMGMHDFGSTYHTQKNKGLINNLDKYSLFENVNKC* >Glyma02g37620.3 sequence type=predicted peptide gene model=Glyma02g37620 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSGGNLSCVLVAVDGSEESMNALRWALNNLKLRSPTLDSTGAPSFIIFHVQSPPSIATGLHPGAIPFGGPSDIEVPAFTAAIEAHQKRITNAVLDHVLGICSEFNLTSKGRTHVLVGDPKEKICEAVQDLHADVLVMGYILYSYFFINKY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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