Glyma02g37500 - SoyBase

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Report for Sequence Feature Glyma02g37500

Feature Type:	gene_model
Chromosome:	Gm02
Start:	42838379
stop:	42839839
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g37500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G02070	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:370445-370947 REVERSE LENGTH=131	SoyBase	E_val: 2.00E-12	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
UniRef100_C6SWE1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SWE1_SOYBN	SoyBase	E_val: 8.00E-143	ISS
UniRef100_Q10QQ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q10QQ7_ORYSJ	SoyBase	E_val: 6.00E-15	ISS

Expression Patterns of Glyma02g37500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g37500

Paralog	Evidence	Comments
Glyma14g35790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g37500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g212100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g37500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g37500

Limit To All Plant Sequences

>Glyma02g37500.1   sequence type=CDS   gene model=Glyma02g37500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACCAAAGGAACAACTCACTCTGAACCCAACAACACTGAATGTTGCATGTGTGGGGATCTTGGCTTCTCTGATCAGCTTTTTCAATGCAAAGCCTGCCAATTCAGATCTCAACACAGATACTGCAGCAATCTCTACCCGAAGCCAGAGTCTCTTGGAACCTGCAATTGGTGTTTGAGTCAAAGAGAGGACACCAAAGAGAGGTCAACCAATTCATCAAATTCTTCCTCATCTATTAGGAACAACGATGATGAGAGCAGAATCAAGAGAATCAGGAATGGTAATAGCTACAACAGTGCTCAAAATATTGGACCGGTGAAGAAGGGAGTGAAAGGGAGTGTCCTTCATCTCCAAATTCATAAACCAATTAAGAAACCAAAGTCACCGGAGTCATCAAGATCACCATCAGCATCCAATTCTCCACCGAAATCTTCGCCGGTTTTGGTTTCAACCCGGAAGAGGATTGTCACCAATGGTACCTTGGAAGAGAGACTGAGGAGGACTAGGTCAGAAGACATCACAAGAAGTGGTGCAACCAAACAGGTCTTCAGGAATAAGGTGAGAAGGTATAAGCTTCTGGATGAAGTTTCAAGTTAA

Predicted protein sequences of Glyma02g37500

Limit To All Plant Sequences

>Glyma02g37500.1   sequence type=predicted peptide   gene model=Glyma02g37500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTKGTTHSEPNNTECCMCGDLGFSDQLFQCKACQFRSQHRYCSNLYPKPESLGTCNWCLSQREDTKERSTNSSNSSSSIRNNDDESRIKRIRNGNSYNSAQNIGPVKKGVKGSVLHLQIHKPIKKPKSPESSRSPSASNSPPKSSPVLVSTRKRIVTNGTLEERLRRTRSEDITRSGATKQVFRNKVRRYKLLDEVSS*

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