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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24380 | AT | Annotation by Michelle Graham. TAIR10: INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Oth | SoyBase | E_val: 3.00E-116 | ISS |
| GO:0009257 | GO-bp | Annotation by Michelle Graham. GO Biological Process: 10-formyltetrahydrofolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0009396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound biosynthetic process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009620 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to fungus | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009695 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0015824 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proline transport | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| KOG2551 | KOG | Phospholipase/carboxyhydrolase | JGI | ISS | |
| PTHR22778 | Panther | OVARIAN CANCER GENE-2 PROTEIN-RELATED | JGI | ISS | |
| PF03959 | PFAM | Serine hydrolase (FSH1) | JGI | ISS | |
| UniRef100_G7KBG3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, putative n=1 Tax=Medicago truncatula RepID=G7KBG3_MEDTR | SoyBase | E_val: 1.00E-130 | ISS |
| UniRef100_I1JGX4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGX4_SOYBN | SoyBase | E_val: 2.00E-159 | ISS |
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Glyma02g37450 not represented in the dataset |
Glyma02g37450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g35720 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g211600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g37450.2 sequence type=transcript gene model=Glyma02g37450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTCAATTGAAGACACCCAGGAAAAGAAAAAGAAAAAGAAAAAAGAGCCTCTGAATCTCTGACTCCTATAAATTGGTTTCACTACCACCACAATGTACAATTGTTATACCTTGTAAACATTCTCTTGCATCCAACCCTTGGAATTAAGCACGTTATTTCTTAGGGTTGATTGAATAAAAATTATAATTAAACAAGATGGGAAGCGATGGTGTGAGGAAACCGAGATTCCTATGCCTTCATGGGTTTCGAACAAGCGGAGAAATATTGAATACACAGTTACATAAGTGGCCACAAACGGTGTTTGACAACCTCGATCTCGTGTTTGTGGATGCTCCTTTTCCTTGCCAAGGCAAATCCGATGTAGAAGGCATTTTTGATCCCCCTTACTACGAGTGGTTCCAGTTCAACAAGGAATTTACAGAGTACACCAACTTTGACGAGTGCCTCCAGTACATTGAGGAATGCATGATCAAGCACGGACCTATTGATGGGCTTCTTGGTTTTTCACAGGGAGCAATATTATCAGCTGCGCTACCGGGTCTTCAGGAGAAGGGCGTGGCACTCACGAAGGTTCCCAAAGTGAAATTCCTAATAATAGTAGGAGGGGCAAAGTTGAGGTCACCTTCAGTGGCGGACAAAGCATATTCTTCTTCCATTAGGGGAGACAGATTTTTTGAACAAGTATGGGGCTGAACTACTAGAATCCTGTAATGAACCCGTGGTGATTCACCATCCCAAGGGACACACAATACCAAGATTAGATGATAAGAGCTTGAAGACCATGATGGATTTCATCGAAAGAATTAAGAAAGATGTCTCAAAATAAGAAATGAGTTTAGAGTTTAGACAACAAGCCAGTGGATTGGTTTTCAGATTGCTTATGTGTGCTGCTTTCCGATAATTCTAAGTCAATTTTGATTCACAATTTCAAGGATGGGCATCTAACAGGAGAATACACGTTTCATGGCAGCTAATTTGGTTTGGCACCATTTGGGCTATATGTCTATATCAGCATATAATACTCAATTATGTATTGACTTTACATTAGGGGAATTCTCATAATTGGAGAGTGGGGACCATTATTAGCATCAACATATCCTGAGATTATTATTACAGCAATAGAAAGTCTTGCTTTTACTAACAGATCTGAGATTACTTGAATTATTGATAGCTAACAGTAGACTGGCCACAAAGAGTGACCAAGATTTGGTTGACATATAACAATAGAAAGACCAAGAGCAGGAGTTATTTGTGAAGAGTTGCAAAATTGTAAGGGTGGCAACACAAGGTCATTCTAACTTATATTTTTTTACTATACTAGTCAATTGTGTAACTAAACATGTTTCACTTCACAATTTTTCACTAATGAATAAATTAATTTTTGTTCCAAATT
>Glyma02g37450.1 sequence type=CDS gene model=Glyma02g37450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGCGATGGTGTGAGGAAACCGAGATTCCTATGCCTTCATGGGTTTCGAACAAGCGGAGAAATATTGAATACACAGTTACATAAGTGGCCACAAACGGTGTTTGACAACCTCGATCTCGTGTTTGTGGATGCTCCTTTTCCTTGCCAAGGCAAATCCGATGTAGAAGGCATTTTTGATCCCCCTTACTACGAGTGGTTCCAGTTCAACAAGGAATTTACAGAGTACACCAACTTTGACGAGTGCCTCCAGTACATTGAGGAATGCATGATCAAGCACGGACCTATTGATGGGCTTCTTGGTTTTTCACAGGGAGCAATATTATCAGCTGCGCTACCGGGTCTTCAGGAGAAGGGCGTGGCACTCACGAAGGTTCCCAAAGTGAAATTCCTAATAATAGTAGGAGGGGCAAAGTTGAGGTCACCTTCAGTGGCGGACAAAGCATATTCTTCTTCCATTAGGTGTCCCTCCCTACACTTTCTCGGGGAGACAGATTTTTTGAACAAGTATGGGGCTGAACTACTAGAATCCTGTAATGAACCCGTGGTGATTCACCATCCCAAGGGACACACAATACCAAGATTAGATGATAAGAGCTTGAAGACCATGATGGATTTCATCGAAAGAATTAAGAAAGATGTCTCAAAATAA >Glyma02g37450.2 sequence type=CDS gene model=Glyma02g37450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAAGCGATGGTGTGAGGAAACCGAGATTCCTATGCCTTCATGGGTTTCGAACAAGCGGAGAAATATTGAATACACAGTTACATAAGTGGCCACAAACGGTGTTTGACAACCTCGATCTCGTGTTTGTGGATGCTCCTTTTCCTTGCCAAGGCAAATCCGATGTAGAAGGCATTTTTGATCCCCCTTACTACGAGTGGTTCCAGTTCAACAAGGAATTTACAGAGTACACCAACTTTGACGAGTGCCTCCAGTACATTGAGGAATGCATGATCAAGCACGGACCTATTGATGGGCTTCTTGGTTTTTCACAGGGAGCAATATTATCAGCTGCGCTACCGGGTCTTCAGGAGAAGGGCGTGGCACTCACGAAGGTTCCCAAAGTGAAATTCCTAATAATAGTAGGAGGGGCAAAGTTGAGGTCACCTTCAGTGGCGGACAAAGCATATTCTTCTTCCATTAGGGGAGACAGATTTTTTGAACAAGTATGGGGCTGA
>Glyma02g37450.1 sequence type=predicted peptide gene model=Glyma02g37450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSDGVRKPRFLCLHGFRTSGEILNTQLHKWPQTVFDNLDLVFVDAPFPCQGKSDVEGIFDPPYYEWFQFNKEFTEYTNFDECLQYIEECMIKHGPIDGLLGFSQGAILSAALPGLQEKGVALTKVPKVKFLIIVGGAKLRSPSVADKAYSSSIRCPSLHFLGETDFLNKYGAELLESCNEPVVIHHPKGHTIPRLDDKSLKTMMDFIERIKKDVSK* >Glyma02g37450.2 sequence type=predicted peptide gene model=Glyma02g37450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSDGVRKPRFLCLHGFRTSGEILNTQLHKWPQTVFDNLDLVFVDAPFPCQGKSDVEGIFDPPYYEWFQFNKEFTEYTNFDECLQYIEECMIKHGPIDGLLGFSQGAILSAALPGLQEKGVALTKVPKVKFLIIVGGAKLRSPSVADKAYSSSIRGDRFFEQVWG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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