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Report for Sequence Feature Glyma02g37450
Feature Type: gene_model
Chromosome: Gm02
Start: 42760922
stop: 42765648
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g37450
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G24380 AT
Annotation by Michelle Graham. TAIR10: INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Oth
SoyBase E_val: 3.00E-116 ISS
GO:0009257 GO-bp
Annotation by Michelle Graham. GO Biological Process: 10-formyltetrahydrofolate biosynthetic process
SoyBase N/A ISS
GO:0009396 GO-bp
Annotation by Michelle Graham. GO Biological Process: folic acid-containing compound biosynthetic process
SoyBase N/A ISS
GO:0009611 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to wounding
SoyBase N/A ISS
GO:0009620 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to fungus
SoyBase N/A ISS
GO:0009693 GO-bp
Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process
SoyBase N/A ISS
GO:0009695 GO-bp
Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process
SoyBase N/A ISS
GO:0009753 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus
SoyBase N/A ISS
GO:0015824 GO-bp
Annotation by Michelle Graham. GO Biological Process: proline transport
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
KOG2551
KOG
Phospholipase/carboxyhydrolase
JGI ISS
PTHR22778 Panther
OVARIAN CANCER GENE-2 PROTEIN-RELATED
JGI ISS
PF03959 PFAM
Serine hydrolase (FSH1)
JGI ISS
UniRef100_G7KBG3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Hydrolase, putative n=1 Tax=Medicago truncatula RepID=G7KBG3_MEDTR
SoyBase E_val: 1.00E-130 ISS
UniRef100_I1JGX4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGX4_SOYBN
SoyBase E_val: 2.00E-159 ISS
Expression Patterns of Glyma02g37450
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g37450
Paralog Evidence Comments
Glyma14g35720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g37450 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g211600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g37450
Transcripts of Glyma02g37450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g37450.2 sequence type=transcript gene model=Glyma02g37450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATTCAATTGAAGACACCCAGGAAAAGAAAAAGAAAAAGAAAAAAGAGCCTCTGAATCTCTGACTCCTATAAATTGGTTTCACTACCACCACAATGTACAATTGTTATACCTTGTAAACATTCTCTTGCATCCAACCCTTGGAATTAAGCACGTTATTTCTTAGGGTTGATTGAATAAAAATTATAATTAAACAAGATGGGAAGCGATGGTGTGAGGAAACCGAGATTCCTATGCCTTCATGGGTTTCGAACAAGCGGAGAAATATTGAATACACAGTTACATAAGTGGCCACAAACGGTGTTTGACAACCTCGATCTCGTGTTTGTGGATGCTCCTTTTCCTTGCCAAGGCAAATCCGATGTAGAAGGCATTTTTGATCCCCCTTACTACGAGTGGTTCCAGTTCAACAAGGAATTTACAGAGTACACCAACTTTGACGAGTGCCTCCAGTACATTGAGGAATGCATGATCAAGCACGGACCTATTGATGGGCTTCTTGGTTTTTCACAGGGAGCAATATTATCAGCTGCGCTACCGGGTCTTCAGGAGAAGGGCGTGGCACTCACGAAGGTTCCCAAAGTGAAATTCCTAATAATAGTAGGAGGGGCAAAGTTGAGGTCACCTTCAGTGGCGGACAAAGCATATTCTTCTTCCATTAGGGGAGACAGATTTTTTGAACAAGTATGGGGCTGAACTACTAGAATCCTGTAATGAACCCGTGGTGATTCACCATCCCAAGGGACACACAATACCAAGATTAGATGATAAGAGCTTGAAGACCATGATGGATTTCATCGAAAGAATTAAGAAAGATGTCTCAAAATAAGAAATGAGTTTAGAGTTTAGACAACAAGCCAGTGGATTGGTTTTCAGATTGCTTATGTGTGCTGCTTTCCGATAATTCTAAGTCAATTTTGATTCACAATTTCAAGGATGGGCATCTAACAGGAGAATACACGTTTCATGGCAGCTAATTTGGTTTGGCACCATTTGGGCTATATGTCTATATCAGCATATAATACTCAATTATGTATTGACTTTACATTAGGGGAATTCTCATAATTGGAGAGTGGGGACCATTATTAGCATCAACATATCCTGAGATTATTATTACAGCAATAGAAAGTCTTGCTTTTACTAACAGATCTGAGATTACTTGAATTATTGATAGCTAACAGTAGACTGGCCACAAAGAGTGACCAAGATTTGGTTGACATATAACAATAGAAAGACCAAGAGCAGGAGTTATTTGTGAAGAGTTGCAAAATTGTAAGGGTGGCAACACAAGGTCATTCTAACTTATATTTTTTTACTATACTAGTCAATTGTGTAACTAAACATGTTTCACTTCACAATTTTTCACTAATGAATAAATTAATTTTTGTTCCAAATT
Coding sequences of Glyma02g37450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g37450.1 sequence type=CDS gene model=Glyma02g37450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAGCGATGGTGTGAGGAAACCGAGATTCCTATGCCTTCATGGGTTTCGAACAAGCGGAGAAATATTGAATACACAGTTACATAAGTGGCCACAAACGGTGTTTGACAACCTCGATCTCGTGTTTGTGGATGCTCCTTTTCCTTGCCAAGGCAAATCCGATGTAGAAGGCATTTTTGATCCCCCTTACTACGAGTGGTTCCAGTTCAACAAGGAATTTACAGAGTACACCAACTTTGACGAGTGCCTCCAGTACATTGAGGAATGCATGATCAAGCACGGACCTATTGATGGGCTTCTTGGTTTTTCACAGGGAGCAATATTATCAGCTGCGCTACCGGGTCTTCAGGAGAAGGGCGTGGCACTCACGAAGGTTCCCAAAGTGAAATTCCTAATAATAGTAGGAGGGGCAAAGTTGAGGTCACCTTCAGTGGCGGACAAAGCATATTCTTCTTCCATTAGGTGTCCCTCCCTACACTTTCTCGGGGAGACAGATTTTTTGAACAAGTATGGGGCTGAACTACTAGAATCCTGTAATGAACCCGTGGTGATTCACCATCCCAAGGGACACACAATACCAAGATTAGATGATAAGAGCTTGAAGACCATGATGGATTTCATCGAAAGAATTAAGAAAGATGTCTCAAAATAA
>Glyma02g37450.2 sequence type=CDS gene model=Glyma02g37450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAAGCGATGGTGTGAGGAAACCGAGATTCCTATGCCTTCATGGGTTTCGAACAAGCGGAGAAATATTGAATACACAGTTACATAAGTGGCCACAAACGGTGTTTGACAACCTCGATCTCGTGTTTGTGGATGCTCCTTTTCCTTGCCAAGGCAAATCCGATGTAGAAGGCATTTTTGATCCCCCTTACTACGAGTGGTTCCAGTTCAACAAGGAATTTACAGAGTACACCAACTTTGACGAGTGCCTCCAGTACATTGAGGAATGCATGATCAAGCACGGACCTATTGATGGGCTTCTTGGTTTTTCACAGGGAGCAATATTATCAGCTGCGCTACCGGGTCTTCAGGAGAAGGGCGTGGCACTCACGAAGGTTCCCAAAGTGAAATTCCTAATAATAGTAGGAGGGGCAAAGTTGAGGTCACCTTCAGTGGCGGACAAAGCATATTCTTCTTCCATTAGGGGAGACAGATTTTTTGAACAAGTATGGGGCTGA
Predicted protein sequences of Glyma02g37450
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g37450.1 sequence type=predicted peptide gene model=Glyma02g37450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSDGVRKPRFLCLHGFRTSGEILNTQLHKWPQTVFDNLDLVFVDAPFPCQGKSDVEGIFDPPYYEWFQFNKEFTEYTNFDECLQYIEECMIKHGPIDGLLGFSQGAILSAALPGLQEKGVALTKVPKVKFLIIVGGAKLRSPSVADKAYSSSIRCPSLHFLGETDFLNKYGAELLESCNEPVVIHHPKGHTIPRLDDKSLKTMMDFIERIKKDVSK*
>Glyma02g37450.2 sequence type=predicted peptide gene model=Glyma02g37450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSDGVRKPRFLCLHGFRTSGEILNTQLHKWPQTVFDNLDLVFVDAPFPCQGKSDVEGIFDPPYYEWFQFNKEFTEYTNFDECLQYIEECMIKHGPIDGLLGFSQGAILSAALPGLQEKGVALTKVPKVKFLIIVGGAKLRSPSVADKAYSSSIRGDRFFEQVWG*