Glyma02g37440 - SoyBase

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Report for Sequence Feature Glyma02g37440

Feature Type:	gene_model
Chromosome:	Gm02
Start:	42756029
stop:	42759181
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g37440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14600	AT	Annotation by Michelle Graham. TAIR10: Target SNARE coiled-coil domain protein \| chr4:8376562-8378078 FORWARD LENGTH=137	SoyBase	E_val: 2.00E-65	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3385	KOG	V-SNARE	JGI		ISS
PTHR12791	Panther	GOLGI SNARE BET1-RELATED	JGI		ISS
PTHR12791:SF17	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF05739	PFAM	SNARE domain	JGI		ISS
UniRef100_C6T1H3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T1H3_SOYBN	SoyBase	E_val: 2.00E-92	ISS
UniRef100_G7KBG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bet1-like protein n=1 Tax=Medicago truncatula RepID=G7KBG1_MEDTR	SoyBase	E_val: 2.00E-78	ISS

Expression Patterns of Glyma02g37440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g37440 not represented in the dataset	Glyma02g37440 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g37440

Paralog	Evidence	Comments
Glyma14g35710	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g37440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g211500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g37440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g37440

Limit To All Plant Sequences

>Glyma02g37440.1   sequence type=CDS   gene model=Glyma02g37440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCGCCAATTCCCACAGAGTGGGTTCTTCCTACGGTGGCGCTGCCCCTTACCGATCAAGAGATGGGCTTAGCCCCCGACCCGTTGGTGCCTCAGAGGAGATCCAATTACGAATTGATCCCTTGGACTTGGACGATGAGATCACTGGTCTTCATCGCCAAGTTAGAAGATTGAAACATGTTGCTGAGGAGATAGGAACAGAAGTGAAGTATCAGAAAAATTTTCTTGAAGAACTGCAAATGACAATGATAAAGGCTCAAGCTGGAGTAAAAAATAACTTGAGAAGATTGAACAAGAGCATCATCCAAAGTGGTTCAAACCATATTATTCATGTCATTCTTTTTGCGTTAGTTTGTTTCTTTGTAGTGTACCTTTGGTCCAAGATGATCAGAAAGTGA

Predicted protein sequences of Glyma02g37440

Limit To All Plant Sequences

>Glyma02g37440.1   sequence type=predicted peptide   gene model=Glyma02g37440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVANSHRVGSSYGGAAPYRSRDGLSPRPVGASEEIQLRIDPLDLDDEITGLHRQVRRLKHVAEEIGTEVKYQKNFLEELQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIIHVILFALVCFFVVYLWSKMIRK*

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