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Report for Sequence Feature Glyma02g37440

Feature Type:gene_model
Chromosome:Gm02
Start:42756029
stop:42759181
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G14600AT Annotation by Michelle Graham. TAIR10: Target SNARE coiled-coil domain protein | chr4:8376562-8378078 FORWARD LENGTH=137 SoyBaseE_val: 2.00E-65ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3385 KOG V-SNARE JGI ISS
PTHR12791Panther GOLGI SNARE BET1-RELATED JGI ISS
PTHR12791:SF17Panther SUBFAMILY NOT NAMED JGI ISS
PF05739PFAM SNARE domain JGI ISS
UniRef100_C6T1H3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T1H3_SOYBN SoyBaseE_val: 2.00E-92ISS
UniRef100_G7KBG1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bet1-like protein n=1 Tax=Medicago truncatula RepID=G7KBG1_MEDTR SoyBaseE_val: 2.00E-78ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g37440 not represented in the dataset

Glyma02g37440 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma14g35710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g211500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g37440.1   sequence type=CDS   gene model=Glyma02g37440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCGCCAATTCCCACAGAGTGGGTTCTTCCTACGGTGGCGCTGCCCCTTACCGATCAAGAGATGGGCTTAGCCCCCGACCCGTTGGTGCCTCAGAGGAGATCCAATTACGAATTGATCCCTTGGACTTGGACGATGAGATCACTGGTCTTCATCGCCAAGTTAGAAGATTGAAACATGTTGCTGAGGAGATAGGAACAGAAGTGAAGTATCAGAAAAATTTTCTTGAAGAACTGCAAATGACAATGATAAAGGCTCAAGCTGGAGTAAAAAATAACTTGAGAAGATTGAACAAGAGCATCATCCAAAGTGGTTCAAACCATATTATTCATGTCATTCTTTTTGCGTTAGTTTGTTTCTTTGTAGTGTACCTTTGGTCCAAGATGATCAGAAAGTGA

>Glyma02g37440.1   sequence type=predicted peptide   gene model=Glyma02g37440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVANSHRVGSSYGGAAPYRSRDGLSPRPVGASEEIQLRIDPLDLDDEITGLHRQVRRLKHVAEEIGTEVKYQKNFLEELQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIIHVILFALVCFFVVYLWSKMIRK*







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