SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G21110 | AT | Annotation by Michelle Graham. TAIR10: purin 7 | chr3:7402696-7405273 REVERSE LENGTH=411 | SoyBase | E_val: 0 | ISS |
| GO:0006164 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: toxin catabolic process | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0004639 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016874 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ligase activity | SoyBase | N/A | ISS |
| KOG2835 | KOG | Phosphoribosylamidoimidazole-succinocarboxamide synthase | JGI | ISS | |
| PTHR11609 | Panther | PURINE BIOSYNTHESIS PROTEIN 6/7, PUR6/7 | JGI | ISS | |
| PTHR11609:SF1 | Panther | PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE | JGI | ISS | |
| PF01259 | PFAM | SAICAR synthetase | JGI | ISS | |
| UniRef100_I1JGX0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Glycine max RepID=I1JGX0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JGX0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Glycine max RepID=I1JGX0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g37400 not represented in the dataset |
Glyma02g37400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g35690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g211300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g37400.1 sequence type=CDS gene model=Glyma02g37400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGCGACTTCACGGTTGCGTTAAACCCTCCCAAAACCTTCCGCGCCGATATTCTCCTATCCACCACCAACAACCGCACTTCCCCGGCGGCGCGTGGCTTTCAAACCGTACTCGCGTTCAAACCACCGCGCGCTTTTCGAGGAATCCGCGCTTCGGTGATGCCAAGAGAGGGTCAACAAGCGTCTCTCGGAGACGCCCTTGTCAACACTCCGCGCCGAAGCGACTTCGTTGAGGCCATCAGAAGAACCGCCGCACTCTCCAGCTGCCTCTCAGAAACGAGCCTCCACGCCACCGTTCCCGGCCTCGAGTCCAAAACCCGCGGCAAAGTTCGAGATATATACGACGCTGGGGATTACCTCGTTTTGGTGACCACTGATCGGCAGAGTGCGTTTGATCGGATTCTTGCTTCCATTCCTTTCAAAGGCCAGGTTCTCAATCAGACGAGTTTGTGGTGGTTTGAAAGAACTAAGCATATCGTCTCTAATGCGGTTGTATTGGCTCCAGATAACAATGTTACAATAGCTAGGAAATGTTCAGTTTTCCCAGTTGAGTTTGTTGCTAGAGGGTTTGTCACTGGAAGTACTGATACATCTCTATGGACAGTCTACAATAAAGGCGTTCGGAACTATTGTGGAAATGTCATTCCAGATGGAATGGTAAAAAATCAGAAGTTGCCTAAAAATATACTCACTCCAACAACCAAGGCTGCAGATCATGATGTTCCTATCACTCCAGATGAGATTATAGACAGGGGACTGATGACTCGAGCTGATTATGTAGAAGTTAGTGAAAAAGCATTATCCTTGTTTGAATATGGGCAGCAAGTGGCTTTGGAGCATGGCCTCATATTGGTAGATACTAAGTATGAGTTTGGGAAGGCAAATGATGGTTCAATTATGTTGATTGATGAGGTCCATACTCCTGATTCAAGTAGATATTGGATAGCCAATTCTTACCTGGAGCGCTTTCAAAATGGTCTTGAGCCTGAAAATATTGACAAGGAGTTTTTGAGGCTGTGGTTTATAAGTCACTGCAACCCTTATGAAGATGAGGTCCTTCCTGATGCTCCTGAAGATCTTGTCTGTGAATTAGCCTGGCGATACATTTTCTTGTATGAGACTATAACAAAATCAAAGTTTGAGGTGCCATCGACTGAGGAGCCTATACATGACCGAATTACACGAAATGTTGCATCTGCACTGTCATCCCTAAAGTAG
>Glyma02g37400.1 sequence type=predicted peptide gene model=Glyma02g37400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGDFTVALNPPKTFRADILLSTTNNRTSPAARGFQTVLAFKPPRAFRGIRASVMPREGQQASLGDALVNTPRRSDFVEAIRRTAALSSCLSETSLHATVPGLESKTRGKVRDIYDAGDYLVLVTTDRQSAFDRILASIPFKGQVLNQTSLWWFERTKHIVSNAVVLAPDNNVTIARKCSVFPVEFVARGFVTGSTDTSLWTVYNKGVRNYCGNVIPDGMVKNQKLPKNILTPTTKAADHDVPITPDEIIDRGLMTRADYVEVSEKALSLFEYGQQVALEHGLILVDTKYEFGKANDGSIMLIDEVHTPDSSRYWIANSYLERFQNGLEPENIDKEFLRLWFISHCNPYEDEVLPDAPEDLVCELAWRYIFLYETITKSKFEVPSTEEPIHDRITRNVASALSSLK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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