Report for Sequence Feature Glyma02g37330
Feature Type: gene_model
Chromosome: Gm02
Start: 42655279
stop: 42657190
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g37330
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G72200 AT
Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:27169935-27171149 REVERSE LENGTH=404
SoyBase E_val: 1.00E-57 ISS
GO:0006826 GO-bp
Annotation by Michelle Graham. GO Biological Process: iron ion transport
SoyBase N/A ISS
GO:0010106 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation
SoyBase N/A ISS
GO:0010167 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to nitrate
SoyBase N/A ISS
GO:0010413 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process
SoyBase N/A ISS
GO:0015706 GO-bp
Annotation by Michelle Graham. GO Biological Process: nitrate transport
SoyBase N/A ISS
GO:0045492 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
PTHR22765 Panther
RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING
JGI ISS
PTHR22765:SF21 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00097 PFAM
Zinc finger, C3HC4 type (RING finger)
JGI ISS
UniRef100_G7KAJ9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: RING finger-like protein n=1 Tax=Medicago truncatula RepID=G7KAJ9_MEDTR
SoyBase E_val: 5.00E-110 ISS
UniRef100_I1JGW6 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JGW6_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g37330
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma02g37330
Paralog Evidence Comments
Glyma14g35580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g37330 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g210600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g37330
Coding sequences of Glyma02g37330
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g37330.1 sequence type=CDS gene model=Glyma02g37330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAACATGCATAAGGAGAGTCCTCTTATCAAACTCCACAGTTTCGACCAAGGCCATGCATGGCTGGCTCTATTGCACCTTCTCATTCACGTCTCACCCGCAGTAACCGGTCAACCGGTAACCCCGCCGGTGCAACCCGACAGCAACAAATCCATGGTCACAATCATGGCCATTTTGGCCATCATGTTTCTCATCTTAGTCTTCCTCTCCATTTACTCCCGCAAGTGCTACGACCGGCAGGCCCCGACACGTGGCATCCTCGACCGCGCGGACCCCACCGGCGCAGCCGGTAACCCGTCGCAAGCTGAATCCAATGGCCTCAACCAAGCCACAATAGAAACGTTCCCAAGTTTCCTCTACGGCGACGTGAAGGGTCTGAAAATCGGAAAAGACACGCTTGCATGCGCGGTTTGCTTGAACGAGTTCGAAGACGACGAGACCCTCCGCATGATCCCCAAATGCTGCCACGTGTACCACCGCTATTGCATTGATGAGTGGTTAGGTTCTCACTCCACGTGCCCGGTGTGTCGCGCCAACCTCGTTCCACAACCAGAAGACGTAAACATCAACACGAATATCCCTTCAATCCTGTCAATTCAGATACCCGATGAACACGAACATGAATATGAATACGAGACTGTTGTTGTTGGTGAGGAACATAAGAGAGGTAATGTCGTGGAATCACCGAAGGTGAATTTGCTTCGGAGGATTCGCTCGTTGAATCATCAGAGCCGTCCATCGAGGTCGAGGTCGACGGGGTTCTTGTCTTCGCTTTTGTTTTCGAGATCAAACTCGTTGGGGCAAATGCAATTGGCGCATAATGCCGCTGGAGAGAATTATGAGAGGTTTACGCTAAGGTTACCCGAGGAGGTACGGAGCCAGATGATGCTGCAGCGTGCGAATAGCTGCGTGTGCTTTACGAGGATGAGCAGTGGCACGTGGGGGTATAGGACGACGAGAAGCGCGGGGAGACGGTGTGTACAGTACGAGAGATTTGGTGGTGGTGATGATGAAGGGTGGGGTTTCACTTTGACTCCACCGAGTCTCATTAGGAACGGTTGGAATAATAATAGATCAACGAGAAAATCACAGCGTTCGGGTCTGGTGTTGGATAATAATAATGCTGATGAGAAATCCTCTGAATTCTTGCCTCTTGGGTAG
Predicted protein sequences of Glyma02g37330
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g37330.1 sequence type=predicted peptide gene model=Glyma02g37330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNMHKESPLIKLHSFDQGHAWLALLHLLIHVSPAVTGQPVTPPVQPDSNKSMVTIMAILAIMFLILVFLSIYSRKCYDRQAPTRGILDRADPTGAAGNPSQAESNGLNQATIETFPSFLYGDVKGLKIGKDTLACAVCLNEFEDDETLRMIPKCCHVYHRYCIDEWLGSHSTCPVCRANLVPQPEDVNINTNIPSILSIQIPDEHEHEYEYETVVVGEEHKRGNVVESPKVNLLRRIRSLNHQSRPSRSRSTGFLSSLLFSRSNSLGQMQLAHNAAGENYERFTLRLPEEVRSQMMLQRANSCVCFTRMSSGTWGYRTTRSAGRRCVQYERFGGGDDEGWGFTLTPPSLIRNGWNNNRSTRKSQRSGLVLDNNNADEKSSEFLPLG*