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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma02g37313

Feature Type:gene_model
Chromosome:Gm02
Start:42630864
stop:42634446
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G72210AT Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:27180066-27182268 FORWARD LENGTH=320 SoyBaseE_val: 2.00E-87ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR11969Panther MAX DIMERIZATION, MAD JGI ISS
PTHR11969:SF8Panther OS08G0483900 PROTEIN JGI ISS
PF00010PFAM Helix-loop-helix DNA-binding domain JGI ISS
UniRef100_F0V437UniRef Annotation by Michelle Graham. Most informative UniRef hit: Basic helix loop helix 1 n=1 Tax=Medicago truncatula RepID=F0V437_MEDTR SoyBaseE_val: 1.00E-123ISS
UniRef100_I1MAX1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MAX1_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g37313 not represented in the dataset

Glyma02g37313 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma14g35560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g210500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g37313.1   sequence type=CDS   gene model=Glyma02g37313   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCTAGAGGCCGTGGTTTTCCCACAAGATCCATTCACTTACGGTTGCAACAACAAAGACTTCTTGTACTCGTTAGTAGGAGGTGATGGTGGTGGTGGAGGAGGAAGCCACGAGTACGGTTTCCAAGCATCATCAGAAGACAAACCCCATGTGGGAATCATTATCAACAACAACAACATAGACCACACCCTGCATGCAAATTGGGATTCATCTTCTCCTTCGGTGTTGCAAAGTGTCAAAGAACAATGGGATTCACACTCCTCCCCTGAAGCTTGCACTGTTGATCAATCCCTCCCCAGAGCCTTCCCTCTTCCTCCTTCTTCTTCATCCCCCGAAGCCGCCGCCACCGGCCGCCGCAAACGACGTCGTACCAAGAGCGCCAAGAACAAGGAGGAGATCGAGAACCAGAGGATGACCCACATTGCAGTTGAGCGCAATAGAAGGAAGCAGATGAACGAGTACCTTGCCGTGCTTAGATCCTTGATGCCTCCTTCTTATGTACAAAGGGGTGATCAAGCCTCTATTATTGGTGGCACCATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGGGCCAGAAGAAGAGAACAAAGGAGGGTAGTGGCTTCTCTGACTCATCACCCTTTTCTGAGTTCTTCATGTTCCCCCAGTACTCGACACGTGCCACACAGAGCAGCAGCAGCAGCAGCAGCAAAGGCTACCCTGGCACGTGCGAGGCCAATAACAACATGGCACGGAACCCTTCATCATGGGCCGTGGCGGACATAGAAGTGACCTTGGTGGATGGCCATGCCAACATGAAGATACTCTGCAAGAAACGACCAGGGATGCTTTTGAAGATGGTTGTTGGTCTTTTAAGTCTTGGTCTCAGCATTCTCCACCTTAATGTTACCACTGTTGACGATATGGTCCTTACCTCAGTTAGTGTTAAGGTAGAGGAAGGGTGTCAGCTGAACACGGTGGATGAAATTGCAGCTGCTGTGCATCAATTATCACGCACGGTTCAGGAGGAAGCTGTGTTCAGCTGA

>Glyma02g37313.1   sequence type=predicted peptide   gene model=Glyma02g37313   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALEAVVFPQDPFTYGCNNKDFLYSLVGGDGGGGGGSHEYGFQASSEDKPHVGIIINNNNIDHTLHANWDSSSPSVLQSVKEQWDSHSSPEACTVDQSLPRAFPLPPSSSSPEAAATGRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGTINFVKELEQLLQCMKGQKKRTKEGSGFSDSSPFSEFFMFPQYSTRATQSSSSSSSKGYPGTCEANNNMARNPSSWAVADIEVTLVDGHANMKILCKKRPGMLLKMVVGLLSLGLSILHLNVTTVDDMVLTSVSVKVEEGCQLNTVDEIAAAVHQLSRTVQEEAVFS*







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