Glyma02g37200 - SoyBase

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Report for Sequence Feature Glyma02g37200

Feature Type:	gene_model
Chromosome:	Gm02
Start:	42525322
stop:	42527173
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g37200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G13620	AT	Annotation by Michelle Graham. TAIR10: Amino acid permease family protein \| chr3:4450904-4452556 REVERSE LENGTH=478	SoyBase	E_val: 0	ISS
GO:0015846	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine transport	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0046520	GO-bp	Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015203	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polyamine transmembrane transporter activity	SoyBase	N/A	ISS
KOG1287	KOG	Amino acid transporters	JGI		ISS
PTHR11785	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PTHR11785:SF78	Panther	CATIONIC AMINO ACID TRANSPORTER	JGI		ISS
PF00324	PFAM	Amino acid permease	JGI		ISS
UniRef100_G7KAH9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Neutral amino acid transport protein n=1 Tax=Medicago truncatula RepID=G7KAH9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0001BA867F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001BA867F related cluster n=1 Tax=unknown RepID=UPI0001BA867F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g37200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g37200

Paralog	Evidence	Comments
Glyma14g35520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g37200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g209400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g37200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g37200

Limit To All Plant Sequences

>Glyma02g37200.1   sequence type=CDS   gene model=Glyma02g37200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGAAGAAGAAAACCCTTCTTGTGCAGAATCTGCACCAACCACAACCGCAACCGCCATCACCCCAAAAAACGTTAAGAAACTAACCCTAATCCCTCTGATATTCCTCATCTACTTCGAGGTCGCGGGCGGGCCCTACGGCGAGGAGCCCGCAGTCCAAGCCGCGGGCCCCCTCCTCGCCCTCCTGGGCTTCCTCATCTTCCCCTTCATCTGGAGCGTCCCGGAAGCCCTAATAACCGCCGAGCTCACCACCGCCCTCCCCGGCAACGGCGGCTTCGTCCTATGGGCCCAACGGGCCTTCGGCCCATTCTGCGGCTCCCTCATGGGCACTTGGAAGTTCCTCAGCGGCGTCATCAACATCGCATCTTTTCCCATCCTCTGCATCGAATACGTCCAGAAAATCTTCCCCATCTTCAACTCCGGTTGGCCCCGCCACGTGGCGGTTCTCTCTTCAACCCTCGCTCTTTCGTTCCTCAACTACACCGGTCTCACCATTGTCGGCTACGTCGCCGTTTTACTCGCCGTCGTTTCCCTCTCACCTTTCATACTAATGTCCCTCATCGCAATCCCGAAGATAAAACCTAATAGGTGGGTTAGTTTAGGTCAAAAGGGTGTGAAGAAAGATTGGAACTTGTTCTTCAACACGCTTTTCTGGAACTTGAATTTCTGGGACAACGTGAGTACTCTAGCAGGGGAAGTTGATGAACCGCAGAAGACTTTTCCTTTGGCTCTCTTTGTTGCTGTGATTTTCACTTGCGTGTCTTACTTGATACCATTATTTGCTGTCACTGGAGCGGTCTCGGTTGATCAAACCGAATGGGAAACCGGTTTCCACGCGCAGGCTGCGGAGATCATCGCGGGGAAATGGTTGAAAATATGGATTGAATTTGGCGCGGTTTTGTCCGCAATTGGACTTTTCGAGGCACAGTTGAGCAGCAGCGCATACCAGATTCTCGGCATGGCGGAGATCGGAATATTACCTAAGTTTTTCGGAGTTCGGTCTAAGTGGTTCGATACGCCGTGGCTGGGGATTTTGATTTCGACCATCATAACGATTGGTGTGTCGTACATGGACTTCACCGACATCATTTCCTCGGCGAATTTCTTGTACAGTTTGGGGATGTTGTTGGAGTTCGCCTCGTTTCTTTGGCTGAGGTGGAAATCTCCCTCCATTAAGAGGCCTTATCGTGTTCCGTTGAAGCTTCCACTTTTGGTGGTAATGTGTTTGGTTCCGTCTGGGTTTCTGGTTTTGATTATGGTTATTGCTACGAAAACTGTTTATTTGGTGAGTGGGGTTATGACCGTGGCTGGGATTGGGTTTTTTTTGTTCATAAAACTCTGCAAGACGAGGAAGTGGGTGGAGTTTGAACAAGAGAAAGATGATGATGGCTTTCAAAGGTATGTGTTGTGA

Predicted protein sequences of Glyma02g37200

Limit To All Plant Sequences

>Glyma02g37200.1   sequence type=predicted peptide   gene model=Glyma02g37200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEEENPSCAESAPTTTATAITPKNVKKLTLIPLIFLIYFEVAGGPYGEEPAVQAAGPLLALLGFLIFPFIWSVPEALITAELTTALPGNGGFVLWAQRAFGPFCGSLMGTWKFLSGVINIASFPILCIEYVQKIFPIFNSGWPRHVAVLSSTLALSFLNYTGLTIVGYVAVLLAVVSLSPFILMSLIAIPKIKPNRWVSLGQKGVKKDWNLFFNTLFWNLNFWDNVSTLAGEVDEPQKTFPLALFVAVIFTCVSYLIPLFAVTGAVSVDQTEWETGFHAQAAEIIAGKWLKIWIEFGAVLSAIGLFEAQLSSSAYQILGMAEIGILPKFFGVRSKWFDTPWLGILISTIITIGVSYMDFTDIISSANFLYSLGMLLEFASFLWLRWKSPSIKRPYRVPLKLPLLVVMCLVPSGFLVLIMVIATKTVYLVSGVMTVAGIGFFLFIKLCKTRKWVEFEQEKDDDGFQRYVL*

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