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Report for Sequence Feature Glyma02g37160

Feature Type:gene_model
Chromosome:Gm02
Start:42491530
stop:42497799
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g37160
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G09010AT Annotation by Michelle Graham. TAIR10: ascorbate peroxidase 4 | chr4:5777502-5779338 REVERSE LENGTH=349 SoyBaseE_val: 3.00E-166ISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0019760GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009534GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009543GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0031977GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen SoyBaseN/AISS
GO:0004601GO-mf Annotation by Michelle Graham. GO Molecular Function: peroxidase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF00141PFAM Peroxidase JGI ISS
UniRef100_I1JGV6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGV6_SOYBN SoyBaseE_val: 0ISS
UniRef100_I6PC02UniRef Annotation by Michelle Graham. Most informative UniRef hit: APX n=1 Tax=Dimocarpus longan RepID=I6PC02_9ROSI SoyBaseE_val: 2.00E-180ISS

Expression Patterns of Glyma02g37160
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g37160 not represented in the dataset
Glyma02g37160 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g37160
ParalogEvidenceComments
Glyma14g35440 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g37160 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g209000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g37160
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g37160
>Glyma02g37160.2   sequence type=transcript   gene model=Glyma02g37160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TATTTGTGAGGATTGGGTCAGATATGAGACAATCCAATAGTTACAGATTTCTCTGGATAAAGTATATCATGTTCATGTGTGACCTTGTACACTCCACCACATAACTTGAAAAGCTTCCACTTTTCTGCTTTTGCATCTCTCTCTCTCTCTTTCGACACCAAACAAAAATAGTTGTGATTGCATTGCAGCAATGGGTGTCTCCTTCCTCTCAACTTGCCCTTCTCTGCTTCCACTCGTTGCTTATGATACACCACCCTCCGCCAGATACCAACCTCGTTCAGTGTCCATTTGTTGTAATAAAACCATAAGCGATGTTAGTGATGGAGAGCCGTTCCATTGGAGAAGGAGAGATGTTCTCAAATGCGCCGGGGCAACCGTTGGCCTGTTGTATCTGTTTTCAGGAATTAATTGGAAGCTCCGGATCTCTTGTTGAAATGGCTAATGCTGCTGACCTGATACAGCGCAGACAGCGTTCTGAATTTCAATCTAAGATTAAGGAAACACTTTTTACAGCCATAAAGGGAAATCCTGATCTTATTCCATCCTTACTGACACTGGCTCTAAATGATGCTTTGACTTATGATAAGGCAACAAAATCAGGTGGTCCAAATGGCTCTATACGGTTCAGCTCAGAAATAGGTAGACCAGAAAATACAGGGCTTTCAGCAGCCTTGAATTTATTAGAGGAAGCCAAAAAGGAAATAGACTCAGATTCCAAAGGTGGATCCATTTCCTATGCAGATCTGATTCACATTGCAGCACAAAGTGCTGCCAAGGCTACATTTTTAGCTGCTGCCATTCGCAAATGCGGTGGAAAAGAGGAGAAAGGGAAAACACTGTACAATGCATACGGATCAAATGGACAGTGGGGTTTGTTCGATAGACAATTTGGTAGGGCTGATGCTCAAGACCCAGATCCAGAGGGAAGAGTTCCACTATGGGAGAAGGCAAGTGTACAGGAAATGAAAGACAAGTTTGTTGCTGTAGGCTTTGGTCCTCGCCAGCTGGCTGTTTTATCTGCATTCTTAGGTCCTGATCAAAATGCAACAGAAACCTTATTGGCCAGTGATCCTGATGTTGCTCCATGGGTTCAGAAATACCAACGGAGCCGTGAAACTGTCTCTCAGACAGATTATGAGGTTGACCTGATAACCACTTTCACAAAACTGAGTACCTTGGGCCAACAAATCAACTATGAGGCATATACATATCCTCCCCCAAAGATCGACATTACCAAACTCAAATTGTAAAAGTAAGACACATATGGTAGTACCATATTATCTTCCTCCTCAAGACATTTCAAGTTTTGACTTGTTTATAATTATTCTCTTTTTGTTTTTTTAACTTGAAACTTTGAGCTTCTATGTAATTATTCATGCACATACAGTGAGATAATTAAGAGTGTTCACGAAACCATCTAAATTTGTTACAAACCACTAAACTGATGAATGGCGTGTTTGGAAATGCATTTGGATACAGTTTTGACAGA
Coding sequences of Glyma02g37160
>Glyma02g37160.1   sequence type=CDS   gene model=Glyma02g37160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGTCTCCTTCCTCTCAACTTGCCCTTCTCTGCTTCCACTCGTTGCTTATGATACACCACCCTCCGCCAGATACCAACCTCGTTCAGTGTCCATTTGTTGTAATAAAACCATAAGCGATGTTAGTGATGGAGAGCCGTTCCATTGGAGAAGGAGAGATGTTCTCAAATGCGCCGGGGCAACCGTTGGCCTGGAATTAATTGGAAGCTCCGGATCTCTTGTTGAAATGGCTAATGCTGCTGACCTGATACAGCGCAGACAGCGTTCTGAATTTCAATCTAAGATTAAGGAAACACTTTTTACAGCCATAAAGGGAAATCCTGATCTTATTCCATCCTTACTGACACTGGCTCTAAATGATGCTTTGACTTATGATAAGGCAACAAAATCAGGTGGTCCAAATGGCTCTATACGGTTCAGCTCAGAAATAGGTAGACCAGAAAATACAGGGCTTTCAGCAGCCTTGAATTTATTAGAGGAAGCCAAAAAGGAAATAGACTCAGATTCCAAAGGTGGATCCATTTCCTATGCAGATCTGATTCACATTGCAGCACAAAGTGCTGCCAAGGCTACATTTTTAGCTGCTGCCATTCGCAAATGCGGTGGAAAAGAGGAGAAAGGGAAAACACTGTACAATGCATACGGATCAAATGGACAGTGGGGTTTGTTCGATAGACAATTTGGTAGGGCTGATGCTCAAGACCCAGATCCAGAGGGAAGAGTTCCACTATGGGAGAAGGCAAGTGTACAGGAAATGAAAGACAAGTTTGTTGCTGTAGGCTTTGGTCCTCGCCAGCTGGCTGTTTTATCTGCATTCTTAGGTCCTGATCAAAATGCAACAGAAACCTTATTGGCCAGTGATCCTGATGTTGCTCCATGGGTTCAGAAATACCAACGGAGCCGTGAAACTGTCTCTCAGACAGATTATGAGGTTGACCTGATAACCACTTTCACAAAACTGAGTACCTTGGGCCAACAAATCAACTATGAGGCATATACATATCCTCCCCCAAAGATCGACATTACCAAACTCAAATTGTAA

>Glyma02g37160.2   sequence type=CDS   gene model=Glyma02g37160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAGTGATGGAGAGCCGTTCCATTGGAGAAGGAGAGATGTTCTCAAATGCGCCGGGGCAACCGTTGGCCTGTTGTATCTGTTTTCAGGAATTAATTGGAAGCTCCGGATCTCTTGTTGAAATGGCTAATGCTGCTGACCTGATACAGCGCAGACAGCGTTCTGAATTTCAATCTAAGATTAAGGAAACACTTTTTACAGCCATAAAGGGAAATCCTGATCTTATTCCATCCTTACTGACACTGGCTCTAAATGATGCTTTGACTTATGATAAGGCAACAAAATCAGGTGGTCCAAATGGCTCTATACGGTTCAGCTCAGAAATAGGTAGACCAGAAAATACAGGGCTTTCAGCAGCCTTGAATTTATTAGAGGAAGCCAAAAAGGAAATAGACTCAGATTCCAAAGGTGGATCCATTTCCTATGCAGATCTGATTCACATTGCAGCACAAAGTGCTGCCAAGGCTACATTTTTAGCTGCTGCCATTCGCAAATGCGGTGGAAAAGAGGAGAAAGGGAAAACACTGTACAATGCATACGGATCAAATGGACAGTGGGGTTTGTTCGATAGACAATTTGGTAGGGCTGATGCTCAAGACCCAGATCCAGAGGGAAGAGTTCCACTATGGGAGAAGGCAAGTGTACAGGAAATGAAAGACAAGTTTGTTGCTGTAGGCTTTGGTCCTCGCCAGCTGGCTGTTTTATCTGCATTCTTAGGTCCTGATCAAAATGCAACAGAAACCTTATTGGCCAGTGATCCTGATGTTGCTCCATGGGTTCAGAAATACCAACGGAGCCGTGAAACTGTCTCTCAGACAGATTATGAGGTTGACCTGATAACCACTTTCACAAAACTGAGTACCTTGGGCCAACAAATCAACTATGAGGCATATACATATCCTCCCCCAAAGATCGACATTACCAAACTCAAATTGTAA
Predicted protein sequences of Glyma02g37160
>Glyma02g37160.1   sequence type=predicted peptide   gene model=Glyma02g37160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVSFLSTCPSLLPLVAYDTPPSARYQPRSVSICCNKTISDVSDGEPFHWRRRDVLKCAGATVGLELIGSSGSLVEMANAADLIQRRQRSEFQSKIKETLFTAIKGNPDLIPSLLTLALNDALTYDKATKSGGPNGSIRFSSEIGRPENTGLSAALNLLEEAKKEIDSDSKGGSISYADLIHIAAQSAAKATFLAAAIRKCGGKEEKGKTLYNAYGSNGQWGLFDRQFGRADAQDPDPEGRVPLWEKASVQEMKDKFVAVGFGPRQLAVLSAFLGPDQNATETLLASDPDVAPWVQKYQRSRETVSQTDYEVDLITTFTKLSTLGQQINYEAYTYPPPKIDITKLKL*

>Glyma02g37160.2   sequence type=predicted peptide   gene model=Glyma02g37160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVMESRSIGEGEMFSNAPGQPLACCICFQELIGSSGSLVEMANAADLIQRRQRSEFQSKIKETLFTAIKGNPDLIPSLLTLALNDALTYDKATKSGGPNGSIRFSSEIGRPENTGLSAALNLLEEAKKEIDSDSKGGSISYADLIHIAAQSAAKATFLAAAIRKCGGKEEKGKTLYNAYGSNGQWGLFDRQFGRADAQDPDPEGRVPLWEKASVQEMKDKFVAVGFGPRQLAVLSAFLGPDQNATETLLASDPDVAPWVQKYQRSRETVSQTDYEVDLITTFTKLSTLGQQINYEAYTYPPPKIDITKLKL*






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