Glyma02g37100 - SoyBase

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Report for Sequence Feature Glyma02g37100

Feature Type:	gene_model
Chromosome:	Gm02
Start:	42435205
stop:	42437432
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g37100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G42670	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1637) \| chr2:17772004-17773700 REVERSE LENGTH=242	SoyBase	E_val: 4.00E-49	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0047800	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteamine dioxygenase activity	SoyBase	N/A	ISS
KOG4281	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR22966	Panther	UNCHARACTERIZED	JGI		ISS
PF07847	PFAM	Protein of unknown function (DUF1637)	JGI		ISS
UniRef100_G7KAG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2-aminoethanethiol dioxygenase n=1 Tax=Medicago truncatula RepID=G7KAG2_MEDTR	SoyBase	E_val: 9.00E-129	ISS
UniRef100_I1JGV1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGV1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g37100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g37100

Paralog	Evidence	Comments
Glyma14g35395	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g37100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g208600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g37100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g37100

Limit To All Plant Sequences

>Glyma02g37100.2   sequence type=transcript   gene model=Glyma02g37100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTTTCTCCCTTCTTCACTGTCCCTTCCATTTAATGCCATCAACCAAACCATAATAATCTTATAGTGATGCTTTAAATTTGGTTGGCTACATAACCAGCTAAGGTTAATTATTACTAAGCTTTACTACCCCAAAACAATGGAAAGGAGCAAAATACAAGTGCTTTATGATGCTAGCCATGCCGTGTTTTCTCAAGAGGGGCTTCCAACCTTTCAACAAATCCACTATCTAAAAACTTTGCTAGGAGTCGACGAGTCCGGGTTGTGTGATTCTCCAACATCAGACGCAACCGTTGATAGCAGCAGCAGCAGCAGCAACAGCAAGGGTTTGCTTTGTGGACACGGATTCTCTGAGATAACATACATTCACATTCATGAATGTGACTATTTCTCTATGGGTGTATTCTGTCTTCCAGCAGGAAAAGTGTTTCCACTTCATGATCACCCGGGAATGACAGTGTTGAGTAAGCTCTTGTATGGCTCTACCTGTGTCAAAGCTTATGACTGGATCGCATTGGATTGTGCTGGAAGCCAAACAATAGGATTGGCTGGGAGGGTAGTGGATGAAGTAATCAAAGCACCACAGGAACCATCCATATTATTTCCAAGAAGTGGTGGCAATATTCATTCTTTCACAGCGTTGACGCCATGTGCAATACTAGACGTGCTATCTCCACCATACTCTGAAGAGTTTGGAAGGCCTTCCACTTACTTCTCAGATATCCCTATCCCTTCTCTTAATGGTTATGCCATACTTGAAGAGAAACCAATGCCTAGTAACCTAGTTGTTCAAGGAGCACCATACCTTGGACCTTCAATTGTAACCGTTGACCATTACAACTTCGGTCAAATCGATTTTGATAATCACGTGTAAATTGAGTGTCTTTTTTGAACAGTACAAATTAAATAGAATAATACAAAATACTATTCATATATCATATTTAACTAATTCAACTAAATTCTTT

Coding sequences of Glyma02g37100

Limit To All Plant Sequences

>Glyma02g37100.1   sequence type=CDS   gene model=Glyma02g37100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGGAGCAAAATACAAGTGCTTTATGATGCTAGCCATGCCGTGTTTTCTCAAGAGGGGCTTCCAACCTTTCAACAAATCCACTATCTAAAAACTTTGCTAGACAAAATTGAAGCTATTGATGTAGGAGTCGACGAGTCCGGGTTGTGTGATTCTCCAACATCAGACGCAACCGTTGATAGCAGCAGCAGCAGCAGCAACAGCAAGGGTTTGCTTTGTGGACACGGATTCTCTGAGATAACATACATTCACATTCATGAATGTGACTATTTCTCTATGGGTGTATTCTGTCTTCCAGCAGGAAAAGTGTTTCCACTTCATGATCACCCGGGAATGACAGTGTTGAGTAAGCTCTTGTATGGCTCTACCTGTGTCAAAGCTTATGACTGGATCGCATTGGATTGTGCTGGAAGCCAAACAATAGGATTGGCTGGGAGGGTAGTGGATGAAGTAATCAAAGCACCACAGGAACCATCCATATTATTTCCAAGAAGTGGTGGCAATATTCATTCTTTCACAGCGTTGACGCCATGTGCAATACTAGACGTGCTATCTCCACCATACTCTGAAGAGTTTGGAAGGCCTTCCACTTACTTCTCAGATATCCCTATCCCTTCTCTTAATGGTTATGCCATACTTGAAGAGAAACCAATGCCTAGTAACCTAGTTGTTCAAGGAGCACCATACCTTGGACCTTCAATTGTAACCGTTGACCATTACAACTTCGGTCAAATCGATTTTGATAATCACGTGTAA

>Glyma02g37100.2   sequence type=CDS   gene model=Glyma02g37100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGGAGCAAAATACAAGTGCTTTATGATGCTAGCCATGCCGTGTTTTCTCAAGAGGGGCTTCCAACCTTTCAACAAATCCACTATCTAAAAACTTTGCTAGGAGTCGACGAGTCCGGGTTGTGTGATTCTCCAACATCAGACGCAACCGTTGATAGCAGCAGCAGCAGCAGCAACAGCAAGGGTTTGCTTTGTGGACACGGATTCTCTGAGATAACATACATTCACATTCATGAATGTGACTATTTCTCTATGGGTGTATTCTGTCTTCCAGCAGGAAAAGTGTTTCCACTTCATGATCACCCGGGAATGACAGTGTTGAGTAAGCTCTTGTATGGCTCTACCTGTGTCAAAGCTTATGACTGGATCGCATTGGATTGTGCTGGAAGCCAAACAATAGGATTGGCTGGGAGGGTAGTGGATGAAGTAATCAAAGCACCACAGGAACCATCCATATTATTTCCAAGAAGTGGTGGCAATATTCATTCTTTCACAGCGTTGACGCCATGTGCAATACTAGACGTGCTATCTCCACCATACTCTGAAGAGTTTGGAAGGCCTTCCACTTACTTCTCAGATATCCCTATCCCTTCTCTTAATGGTTATGCCATACTTGAAGAGAAACCAATGCCTAGTAACCTAGTTGTTCAAGGAGCACCATACCTTGGACCTTCAATTGTAACCGTTGACCATTACAACTTCGGTCAAATCGATTTTGATAATCACGTGTAA

Predicted protein sequences of Glyma02g37100

Limit To All Plant Sequences

>Glyma02g37100.1   sequence type=predicted peptide   gene model=Glyma02g37100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERSKIQVLYDASHAVFSQEGLPTFQQIHYLKTLLDKIEAIDVGVDESGLCDSPTSDATVDSSSSSSNSKGLLCGHGFSEITYIHIHECDYFSMGVFCLPAGKVFPLHDHPGMTVLSKLLYGSTCVKAYDWIALDCAGSQTIGLAGRVVDEVIKAPQEPSILFPRSGGNIHSFTALTPCAILDVLSPPYSEEFGRPSTYFSDIPIPSLNGYAILEEKPMPSNLVVQGAPYLGPSIVTVDHYNFGQIDFDNHV*

>Glyma02g37100.2   sequence type=predicted peptide   gene model=Glyma02g37100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERSKIQVLYDASHAVFSQEGLPTFQQIHYLKTLLGVDESGLCDSPTSDATVDSSSSSSNSKGLLCGHGFSEITYIHIHECDYFSMGVFCLPAGKVFPLHDHPGMTVLSKLLYGSTCVKAYDWIALDCAGSQTIGLAGRVVDEVIKAPQEPSILFPRSGGNIHSFTALTPCAILDVLSPPYSEEFGRPSTYFSDIPIPSLNGYAILEEKPMPSNLVVQGAPYLGPSIVTVDHYNFGQIDFDNHV*

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