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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G22410 | AT | Annotation by Michelle Graham. TAIR10: Class-II DAHP synthetase family protein | chr1:7912120-7914742 FORWARD LENGTH=527 | SoyBase | E_val: 0 | ISS |
| GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0034976 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003849 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity | SoyBase | N/A | ISS |
| PTHR21337 | Panther | PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 | JGI | ISS | |
| PF01474 | PFAM | Class-II DAHP synthetase family | JGI | ISS | |
| UniRef100_G7KAF6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 2-dehydro-3-deoxyphosphoheptonate aldolase (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) n=1 Tax=Medicago truncatula RepID=G7KAF6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JGU8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGU8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g37080 not represented in the dataset |
Glyma02g37080 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma14g35370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g208400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g37080.2 sequence type=transcript gene model=Glyma02g37080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATAAAAGCCTTACCAAAGACAGCTCTCACAATCCCTTTGTGACTCCAAACACACCAATTGCATTTGCATTACCATTCACAATGGCAATCTCCTCCACTTCCAACTCCCTCATTCCCACCAAATCTCTAATCCCCCAATCCCACCCCCTCATTCCCAACACCAGGCCCGCCCTCCGGCCCAAGCCCGGCCCATCCCCTTCCATCTTCGCCGTTCACGCCGCCGAGCCCGCCAAAAACCCCGTCGTCACCGACAAGCCCAAGCCCCAAGCCCAACAACCTCCCCCGGCCTCGGCCCGGGCAACGAAATGGGCCGTGGACAGCTGGAAGTCAAAGAAAGCCCTGCAGCTGCCCGAATACCCGAGCCAGGAGGAGCTGGAGTCCGTCCTCAAAACCCTCGAGGCTTTTCCTCCAATCGTCTTCGCCGGTGAGGCCAGGACATTGGAGGAGCATCTCGCCGAGGCCGCCATGGGAAATGCCTTCCTCCTCCAGGGCGGAGACTGTGCTGAGAGCTTCAAGGAGTTCAATGCCAACAACATCCGTGACACCTTCCGCATCATCCTCCAGATGAGCGTCGTCATGATGTTCGGCGGCCAAATGCCTGTCATCAAGGTGGGGAGAATGGCGGGGCAATTTGCAAAGCCTCGTTCGGATTCGTTTGAGGAGAAGAATGGCGTGAAGCTTCCGAGTTACAGAGGGGATAACATTAACGGAGACTCTTTCGACGAGAAGTCGAGGATTCCGGATCCGCAGAGGATGATTAGGGCTTATTGCCAAGCCGCGGCCACGCTGAATCTTCTCAGAGCTTTTGCCACCGGTGGTTATGCTGCTATGCAGAGGGTTACTCAGTGGAATTTGGACTTCACGGATCACAGCGAACAGGGAGATAGGTACCGAGAGCTTGCTAACCGAGTTGATGAGGCCCTTGGATTCATGGCTGCTGCTGGGCTCACGGTGGACCATCCCATAATGAGAACAACTGAATTCTGGACATCTCATGAGTGCTTATTGTTGCCTTATGAACAATCCCTCACAAGGTTGGATTCAACTTCTGGTCTCTACTATGACTGTTCAGCCCATATGATCTGGGTTGGAGAACGAACCAGGCAGCTTGATGGTGCCCATGTTGAGTTTCTAAGAGGAGTTGCTAATCCCTTGGGAATTAAGGTAAGTGACAAGATGGATCCAAATGAGCTAGTTAAACTCATTGAGATCTTGAATCCTCAAAACAAAGCAGGAAGAATTACTGTGATCACGAGGATGGGAGCTGAAAATATGAGGGTGAAGCTTCCACATCTCATCAGGGCAGTGCGCAGAGCAGGCCAAATTGTCACTTGGGTCAGTGATCCTATGCATGGAAACACCATTAAGGCTCCCTGTGGTCTTAAAACTCGCCCCTTCGATTCCATCAGGGTATAATTCTGGTGTCTCTTTCTATTTCAATTGGTCATTGGTGGCTGTTGAGTAGCTTTAAATATGTGCATGTTAGGATTAAAATCAAATTTCAGTTATTGTCCACTTCCTCAGAAAAAAATATAATCATTTCACTCTGCTTGTCACATAAACTTTGGATAAAT
>Glyma02g37080.1 sequence type=CDS gene model=Glyma02g37080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATCTCCTCCACTTCCAACTCCCTCATTCCCACCAAATCTCTAATCCCCCAATCCCACCCCCTCATTCCCAACACCAGGCCCGCCCTCCGGCCCAAGCCCGGCCCATCCCCTTCCATCTTCGCCGTTCACGCCGCCGAGCCCGCCAAAAACCCCGTCGTCACCGACAAGCCCAAGCCCCAAGCCCAACAACCTCCCCCGGCCTCGGCCCGGGCAACGAAATGGGCCGTGGACAGCTGGAAGTCAAAGAAAGCCCTGCAGCTGCCCGAATACCCGAGCCAGGAGGAGCTGGAGTCCGTCCTCAAAACCCTCGAGGCTTTTCCTCCAATCGTCTTCGCCGGTGAGGCCAGGACATTGGAGGAGCATCTCGCCGAGGCCGCCATGGGAAATGCCTTCCTCCTCCAGGGCGGAGACTGTGCTGAGAGCTTCAAGGAGTTCAATGCCAACAACATCCGTGACACCTTCCGCATCATCCTCCAGATGAGCGTCGTCATGATGTTCGGCGGCCAAATGCCTGTCATCAAGGTGGGGAGAATGGCGGGGCAATTTGCAAAGCCTCGTTCGGATTCGTTTGAGGAGAAGAATGGCGTGAAGCTTCCGAGTTACAGAGGGGATAACATTAACGGAGACTCTTTCGACGAGAAGTCGAGGATTCCGGATCCGCAGAGGATGATTAGGGCTTATTGCCAAGCCGCGGCCACGCTGAATCTTCTCAGAGCTTTTGCCACCGGTGGTTATGCTGCTATGCAGAGGGTTACTCAGTGGAATTTGGACTTCACGGATCACAGCGAACAGGGAGATAGGTACCGAGAGCTTGCTAACCGAGTTGATGAGGCCCTTGGATTCATGGCTGCTGCTGGGCTCACGGTGGACCATCCCATAATGAGAACAACTGAATTCTGGACATCTCATGAGTGCTTATTGTTGCCTTATGAACAATCCCTCACAAGGTTGGATTCAACTTCTGGTCTCTACTATGACTGTTCAGCCCATATGATCTGGGTTGGAGAACGAACCAGGCAGCTTGATGGTGCCCATGTTGAGTTTCTAAGAGGAGTTGCTAATCCCTTGGGAATTAAGGTAAGTGACAAGATGGATCCAAATGAGCTAGTTAAACTCATTGAGATCTTGAATCCTCAAAACAAAGCAGGAAGAATTACTGTGATCACGAGGATGGGAGCTGAAAATATGAGGGTGAAGCTTCCACATCTCATCAGGGCAGTGCGCAGAGCAGGCCAAATTGTCACTTGGGTCAGTGATCCTATGCATGGAAACACCATTAAGGCTCCCTGTGGTCTTAAAACTCGCCCCTTCGATTCCATCAGGGCCGAAGTGAGAGCATTCTTCGACGTACACGAGCAAGAAGGAAGCCACCCAGGAGGGGTTCATCTAGAGATGACGGGTCAGAATGTGACCGAGTGCATTGGTGGGTCAAGGACGGTCACATTTGATGACTTGAGCTCACGTTACCACACACACTGTGACCCAAGGCTCAATGCTTCACAATCTCTTGAGCTTGCTTTCATCATCGCTGAGCGTTTGAGAAAGAGCAGGATCAGATCGCAGCAACCTCTTGCCCCTCTAGGAGTACTGTAA >Glyma02g37080.2 sequence type=CDS gene model=Glyma02g37080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATCTCCTCCACTTCCAACTCCCTCATTCCCACCAAATCTCTAATCCCCCAATCCCACCCCCTCATTCCCAACACCAGGCCCGCCCTCCGGCCCAAGCCCGGCCCATCCCCTTCCATCTTCGCCGTTCACGCCGCCGAGCCCGCCAAAAACCCCGTCGTCACCGACAAGCCCAAGCCCCAAGCCCAACAACCTCCCCCGGCCTCGGCCCGGGCAACGAAATGGGCCGTGGACAGCTGGAAGTCAAAGAAAGCCCTGCAGCTGCCCGAATACCCGAGCCAGGAGGAGCTGGAGTCCGTCCTCAAAACCCTCGAGGCTTTTCCTCCAATCGTCTTCGCCGGTGAGGCCAGGACATTGGAGGAGCATCTCGCCGAGGCCGCCATGGGAAATGCCTTCCTCCTCCAGGGCGGAGACTGTGCTGAGAGCTTCAAGGAGTTCAATGCCAACAACATCCGTGACACCTTCCGCATCATCCTCCAGATGAGCGTCGTCATGATGTTCGGCGGCCAAATGCCTGTCATCAAGGTGGGGAGAATGGCGGGGCAATTTGCAAAGCCTCGTTCGGATTCGTTTGAGGAGAAGAATGGCGTGAAGCTTCCGAGTTACAGAGGGGATAACATTAACGGAGACTCTTTCGACGAGAAGTCGAGGATTCCGGATCCGCAGAGGATGATTAGGGCTTATTGCCAAGCCGCGGCCACGCTGAATCTTCTCAGAGCTTTTGCCACCGGTGGTTATGCTGCTATGCAGAGGGTTACTCAGTGGAATTTGGACTTCACGGATCACAGCGAACAGGGAGATAGGTACCGAGAGCTTGCTAACCGAGTTGATGAGGCCCTTGGATTCATGGCTGCTGCTGGGCTCACGGTGGACCATCCCATAATGAGAACAACTGAATTCTGGACATCTCATGAGTGCTTATTGTTGCCTTATGAACAATCCCTCACAAGGTTGGATTCAACTTCTGGTCTCTACTATGACTGTTCAGCCCATATGATCTGGGTTGGAGAACGAACCAGGCAGCTTGATGGTGCCCATGTTGAGTTTCTAAGAGGAGTTGCTAATCCCTTGGGAATTAAGGTAAGTGACAAGATGGATCCAAATGAGCTAGTTAAACTCATTGAGATCTTGAATCCTCAAAACAAAGCAGGAAGAATTACTGTGATCACGAGGATGGGAGCTGAAAATATGAGGGTGAAGCTTCCACATCTCATCAGGGCAGTGCGCAGAGCAGGCCAAATTGTCACTTGGGTCAGTGATCCTATGCATGGAAACACCATTAAGGCTCCCTGTGGTCTTAAAACTCGCCCCTTCGATTCCATCAGGGTATAA
>Glyma02g37080.1 sequence type=predicted peptide gene model=Glyma02g37080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAISSTSNSLIPTKSLIPQSHPLIPNTRPALRPKPGPSPSIFAVHAAEPAKNPVVTDKPKPQAQQPPPASARATKWAVDSWKSKKALQLPEYPSQEELESVLKTLEAFPPIVFAGEARTLEEHLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRIILQMSVVMMFGGQMPVIKVGRMAGQFAKPRSDSFEEKNGVKLPSYRGDNINGDSFDEKSRIPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLDFTDHSEQGDRYRELANRVDEALGFMAAAGLTVDHPIMRTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMIWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKAGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKSRIRSQQPLAPLGVL* >Glyma02g37080.2 sequence type=predicted peptide gene model=Glyma02g37080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAISSTSNSLIPTKSLIPQSHPLIPNTRPALRPKPGPSPSIFAVHAAEPAKNPVVTDKPKPQAQQPPPASARATKWAVDSWKSKKALQLPEYPSQEELESVLKTLEAFPPIVFAGEARTLEEHLAEAAMGNAFLLQGGDCAESFKEFNANNIRDTFRIILQMSVVMMFGGQMPVIKVGRMAGQFAKPRSDSFEEKNGVKLPSYRGDNINGDSFDEKSRIPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLDFTDHSEQGDRYRELANRVDEALGFMAAAGLTVDHPIMRTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMIWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKAGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDSIRV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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