Glyma02g36970 - SoyBase

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Report for Sequence Feature Glyma02g36970

Feature Type:	gene_model
Chromosome:	Gm02
Start:	42326683
stop:	42327990
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g36970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30030	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein \| chr4:14682210-14683484 REVERSE LENGTH=424	SoyBase	E_val: 7.00E-98	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG1339	KOG	Aspartyl protease	JGI		ISS
PTHR13683	Panther	ASPARTYL PROTEASES	JGI		ISS
PTHR13683:SF98	Panther	CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED	JGI		ISS
PF00026	PFAM	Eukaryotic aspartyl protease	JGI		ISS
UniRef100_B9T5B0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase nepenthesin-1, putative n=1 Tax=Ricinus communis RepID=B9T5B0_RICCO	SoyBase	E_val: 4.00E-118	ISS
UniRef100_I1JGT9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JGT9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g36970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g36970

Paralog	Evidence	Comments
Glyma17g07790	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g36970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g207600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g36970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g36970

Limit To All Plant Sequences

>Glyma02g36970.2   sequence type=CDS   gene model=Glyma02g36970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACACCACTTGTTTATACACTTGTTTCACTGCCTTTCATATTTCATTTCTCCTTAACCACTGCCACCATCACAACCTCAACTATTAACCTAGTGATTAAGCTCATACACCATGAATCATCATTATCTCCCTACAATTCAAAAGACACCATTTGGGATCATTACTCTCATAAAATTCTGAAGCAAACTTTTAGTAATGATTATATCTCCAATCTTGTTCCTAGCCCCAGATATGTTGTGTTCTTGATGAATTTCTCCATAGGTGAACCACCTATTCCACAACTTGCTGTCATGGACACTGGCAGCAGCCTTACATGGGTTATGTGTCATCCTTGTTCATCTTGTTCACAGCAATCTGTTCCAATATTTGACCCTTCAAAATCTTCCACATATTCTAACTTGTCATGCAGTGAATGTAACAAATGTGATGTGGTGAATGGTGAGTGTCCATACAGTGTTGAATATGTTGGGAGTGGCTCATCACAAGGGATCTATGCTAGGGAACAATTAACACTAGAGACCATAGATGAAAGCATAATCAAAGTTCCTAGTTTGATATTTGGATGTGGTCGTAAGTTTAGTATATCATCCAATGGATACCCCTACCAAGGAATCAATGGGGTGTTTGGACTTGGTAGTGGAAGGTTTTCTTTGCTACCTAGCTTTGGTAAGAAATTTTCATATTGTATTGGTAACTTAAGAAATACTAATTATAAGTTTAACAGATTAGTCTTGGGGGACAAAGCAAATATGCAAGGTGACTCAACTACTTTGAATGTGATCAATGGTTTGTATTATGTTAATCTAGAAGCTATAAGTATAGGAGGGAGAAAGCTTGATATTGATCCAACATTGTTTGAAAGATCAATAACAGATAATAACAGTGGAGTGATAATTGACTCTGGAGCCGACCACACATGGCTTACAAAATATGGATTTGAAGTGCTAAGCTTTGAAGTTGAGAATCTTCTTGAAGGGGTTTTGGTTTTGGCCCAACAAGATAAGCACAATCCTTATACTTTGTGCTATAGTGGTGTGGTAAGCCAGGACCTAAGTGGCTTTCCGTTGGTGACATTTCATTTTGCTGAGGGTGCTGTTTTGGACTTGGATGTAACAAGTATGTTTATTCAGACCACAGAGAATGAATTTTGCATGGCTATGCTTCCAGGGAACTATTTTGGAGATGACTATGAAAGCTTTTCTTCTATTGGAATGTTGGCTCAACAGAATTATAATGTTGGCTATGACTTAAATAGGATGCGTGTGTACTTTCAGAGGATTGACTGTGAACTTCTTGATGGGTGA

Predicted protein sequences of Glyma02g36970

Limit To All Plant Sequences

>Glyma02g36970.2   sequence type=predicted peptide   gene model=Glyma02g36970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATPLVYTLVSLPFIFHFSLTTATITTSTINLVIKLIHHESSLSPYNSKDTIWDHYSHKILKQTFSNDYISNLVPSPRYVVFLMNFSIGEPPIPQLAVMDTGSSLTWVMCHPCSSCSQQSVPIFDPSKSSTYSNLSCSECNKCDVVNGECPYSVEYVGSGSSQGIYAREQLTLETIDESIIKVPSLIFGCGRKFSISSNGYPYQGINGVFGLGSGRFSLLPSFGKKFSYCIGNLRNTNYKFNRLVLGDKANMQGDSTTLNVINGLYYVNLEAISIGGRKLDIDPTLFERSITDNNSGVIIDSGADHTWLTKYGFEVLSFEVENLLEGVLVLAQQDKHNPYTLCYSGVVSQDLSGFPLVTFHFAEGAVLDLDVTSMFIQTTENEFCMAMLPGNYFGDDYESFSSIGMLAQQNYNVGYDLNRMRVYFQRIDCELLDG*

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