Glyma02g36960 - SoyBase

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Report for Sequence Feature Glyma02g36960

Feature Type:	gene_model
Chromosome:	Gm02
Start:	42320066
stop:	42325359
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g36960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G30510	AT	Annotation by Michelle Graham. TAIR10: homolog of yeast autophagy 18 (ATG18) B \| chr4:14905299-14906915 REVERSE LENGTH=312	SoyBase	E_val: 8.00E-159	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016236	GO-bp	Annotation by Michelle Graham. GO Biological Process: macroautophagy	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0070772	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: PAS complex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
GO:0080025	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol-3,5-bisphosphate binding	SoyBase	N/A	ISS
KOG2110	KOG	Uncharacterized conserved protein, contains WD40 repeats	JGI		ISS
PTHR11227	Panther	WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES (WIPI)-RELATED	JGI		ISS
PTHR11227:SF21	Panther	OS02G0791800 PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_B9T6W4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9T6W4_RICCO	SoyBase	E_val: 2.00E-180	ISS
UniRef100_I1JGT6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JGT6_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma02g36960

Locus	Gene Symbol	Protein Name
	ATG18b	yeast autophagy 18 gene b

Expression Patterns of Glyma02g36960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g36960 not represented in the dataset	Glyma02g36960 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g36960

Paralog	Evidence	Comments
Glyma17g07800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g36960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g207500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g36960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g36960

Limit To All Plant Sequences

>Glyma02g36960.3   sequence type=transcript   gene model=Glyma02g36960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCATTAAGAAAAAGAATTGGGTAGAGTCGGGTGGGATAAGTACAAGTTCATAAGAATTGGGAAGGTGATGAAACTAATCGATGAGCAGCAGTGAAAAAAAACTTGTTTGAACCCCAATGATTAATTATTAATCAAATTCAATTCAATGACCAACCAATCTTCTTCGCCCTCTTTACTTTGCGCTTCTTTCAACCAGGACCACAGTTACTTTGCCGTTGGCACCAGAGATGGTGTTAGAATATTTGATGCTAATACAGGAAGGCTTTGTTATGAAAGAGGTAAATTCAGTTCCTTTAATTAATCACCTTTTTTCTTGTTAATTTTTTCCCCCTTCCTTCGTGTAGCGGTTGGAGCTTTTGTTATTGCTGAGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAGCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAGACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTGCCAGTACTACCAAAGGATCTGCATTGCTATATAATGTCATGGAATGCCATTTACACTGTGAGATTGAGGCTCATCGTTCACCATTAGCTGCAATGGTTCTTTCTTCTAATGGAATGTACATAGCTACAGCATCTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAGTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCATTTGGACCATCAAAGCGGCTTCCAGATATTCTTGCAGCCTCAAGTTCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCATGATGTGCTGGATCCTGCTCATCATCATGTACTACATAATGCTGTCCCTGCAGGGGTCAAAAGCTATGCTGTAATTCGCAAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAGGGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTTAAGCATTGATGCTCACAATGAATTATCTTGGTCTTTAGGACGCCAGTTCAATCTTTTGACTGTGACCATGGATAAGGCATCATGAGTGACATAAAGTGTTCTTAGAGCGCCAACTATAACTGTGAAGCTTGAGGAATCACATGCTACACTTAAACTTCCAGACCTACTACTGCTGCCAATGTTGAAGTGTTAATCAAAGAAACTGGTAGAGCTGTCGAGGCTGCCAACATGAATGTGTTATTTGGAGGAAACAATGAGTCCAAATTAGAGAACATTTAAATGTAAATTATTGGAATGAATTAAAAAAAATGTAAATTAGTGGTGTATTTGGGATAGAATATTCTTATTTTATAAAGTAGTTTCACTAAAAAAAAAAAAGAGTAGTATATACATAGAGTATGTAGTGTCAACCAATTGGAAAAGTCTTATATATTACTGATAAATATGTTCGCAGTTATATCATTATATATGCAGGGAAAAGATTCTGATAAAATATGCCCTTCCTCGGGAATGAAAACAAAATTGATCTACTCGTGAAATATTTTTTTTGAAAATATGTTATAAAAAAACCACATACAAAGTTGAAATGTTTTTTGAATTGTAAATAGATATGATTATTTACACATTAGTTTATTCATCAAGTTATTCATTAAATTAATCCAAGTGTGGTTTTGTAATTTATGCATAAAAACTCTATTACAGTTACATAAATTATTTAGGTAGAATG

>Glyma02g36960.4   sequence type=transcript   gene model=Glyma02g36960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCATTAAGAAAAAGAATTGGGTAGAGTCGGGTGGGATAAGTACAAGTTCATAAGAATTGGGAAGGTGATGAAACTAATCGATGAGCAGCAGTGAAAAAAAACTTGTTTGAACCCCAATGATTAATTATTAATCAAATTCAATTCAATGACCAACCAATCTTCTTCGCCCTCTTTACTTTGCGCTTCTTTCAACCAGGACCACAGTTACTTTGCCGTTGGCACCAGAGATGGTGTTAGAATATTTGATGCTAATACAGGAAGGCTTTGTTATGAAAGAGCGGTTGGAGCTTTTGTTATTGCTGAGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAGCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAGACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTGCCAGTACTACCAAAGGATCTGCATTGCTATATAATGTCATGGAATGCCATTTACACTGTGAGATTGAGGCTCATCGTTCACCATTAGCTGCAATGGTTCTTTCTTCTAATGGAATGTACATAGCTACAGCATCTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAGTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCATTTGGACCATCAAAGCGGCTTCCAGATATTCTTGCAGCCTCAAGTTCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCATGATGTGCTGGATCCTGCTCATCATCATGTACTACATAATGCTGTCCCTGCAGGGGTCAAAAGCTATGCTGTAATTCGCAAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAGGGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTTAAGCATTGATGCTCACAATGAATTATCTTGGTCTTTAGGACGCCAGTTCAATCTTTTGACTGTGACCATGGATAAGGCATCATGAGTGACATAAAGTGTTCTTAGAGCGCCAACTATAACTGTGAAGCTTGAGGAATCACATGCTACACTTAAACTTCCAGACCTACTACTGCTGCCAATGTTGAAGTGTTAATCAAAGAAACTGGTAGAGCTGTCGAGGCTGCCAACATGAATGTGTTATTTGGAGGAAACAATGAGTCCAAATTAGAGAACATTTAAATGTAAATTATTGGAATGAATTAAAAAAAATGTAAATTAGTGGTGTATTTGGGATAGAATATTCTTATTTTATAAAGTAGTTTCACTAAAAAAAAAAAAGAGTAGTATATACATAGAGTATGTAGTGTCAACCAATTGGAAAAGTCTTATATATTACTGATAAATATGTTCGCAGTTATATCATTATATATGCAGGGAAAAGATTCTGATAAAATATGCCCTTCCTCGGGAATGAAAACAAAATTGATCTACTCGTGAAATATTTTTTTTGAAAATATGTTATAAAAAAACCACATACAAAGTTGAAATGTTTTTTGAATTGTAAATAGATATGATTATTTACACATTAGTTTATTCATCAAGTTATTCATTAAATTAATCCAAGTGTGGTTTTGTAATTTATGCATAAAAACTCTATTACAGTTACATAAATTATTTAGGTAGAATG

Coding sequences of Glyma02g36960

Limit To All Plant Sequences

>Glyma02g36960.1   sequence type=CDS   gene model=Glyma02g36960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAACCAATCTTCTTCGCCCTCTTTACTTTGCGCTTCTTTCAACCAGGACCACAGTTACTTTGCCGTTGGCACCAGAGATGGTGTTAGAATATTTGATGCTAATACAGGAAGGCTTTGTTATGAAAGAGCGGTTGGAGCTTTTGTTATTGCTGAGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAGCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAGACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTGCCAGTACTACCAAAGGATCTGCATTGCTATATAATGTCATGGAATGCCATTTACACTGTGAGATTGAGGCTCATCGTTCACCATTAGCTGCAATGGTTCTTTCTTCTAATGGAATGTACATAGCTACAGCATCTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAGTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCATTTGGACCATCAAAGCGGCTTCCAGATATTCTTGCAGCCTCAAGTTCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCATGATGTGCTGGATCCTGCTCATCATCATGTACTACATAATGCTGTCCCTGCAGGGGTCAAAAGCTATGCTGTAATTCGCAAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAGGGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTTAAGCATTGATGCTCACAATGAATTATCTTGGTCTTTAGGACGCCAGTTCAATCTTTTGACTGTGACCATGGATAAGGCATCATGA

>Glyma02g36960.3   sequence type=CDS   gene model=Glyma02g36960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAGCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAGACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTGCCAGTACTACCAAAGGATCTGCATTGCTATATAATGTCATGGAATGCCATTTACACTGTGAGATTGAGGCTCATCGTTCACCATTAGCTGCAATGGTTCTTTCTTCTAATGGAATGTACATAGCTACAGCATCTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAGTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCATTTGGACCATCAAAGCGGCTTCCAGATATTCTTGCAGCCTCAAGTTCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCATGATGTGCTGGATCCTGCTCATCATCATGTACTACATAATGCTGTCCCTGCAGGGGTCAAAAGCTATGCTGTAATTCGCAAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAGGGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTTAAGCATTGATGCTCACAATGAATTATCTTGGTCTTTAGGACGCCAGTTCAATCTTTTGACTGTGACCATGGATAAGGCATCATGA

>Glyma02g36960.4   sequence type=CDS   gene model=Glyma02g36960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAACCAATCTTCTTCGCCCTCTTTACTTTGCGCTTCTTTCAACCAGGACCACAGTTACTTTGCCGTTGGCACCAGAGATGGTGTTAGAATATTTGATGCTAATACAGGAAGGCTTTGTTATGAAAGAGCGGTTGGAGCTTTTGTTATTGCTGAGATGCTGTTTAGCTCCAACCTTCTTGCTATCGTTGGAGCTGGTCATCAGCCATCTTTGTCTCCTCGCCGTCTTTGTTTATTCAATACAACCACTGGAGCTGCTCTTAGAGAATTGAATTTTCTAACTTCCATACTTGCTGTTCGCATGAATAGACAAAGACTCATTGTCATTTTACAAGACAAAGCATATATATATGAAATAAATAGTCTCACAATCTTGGATACTATTGACACAGTGCCAAATATTAAAGGACTTTGCGCTTTTTCCCCTAGTTTGGATGCATGTTACTTGGCTCTTCCTGCCAGTACTACCAAAGGATCTGCATTGCTATATAATGTCATGGAATGCCATTTACACTGTGAGATTGAGGCTCATCGTTCACCATTAGCTGCAATGGTTCTTTCTTCTAATGGAATGTACATAGCTACAGCATCTGAGCAAGGGACCATAATCAGAGTCCATTTGGTGTCAGATGCAACAAAGTCATATAGCTTTAGAAGGGGGACATATCCGTCTACTATATTTTCTGTTTCATTTGGACCATCAAAGCGGCTTCCAGATATTCTTGCAGCCTCAAGTTCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGCAGTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCATGATGTGCTGGATCCTGCTCATCATCATGTACTACATAATGCTGTCCCTGCAGGGGTCAAAAGCTATGCTGTAATTCGCAAGGTTGAAAATGTCACCAACTCCTCATCATCTGAACTCCTAGCTTGTAGGGCCATTATGTCCGTAATAACTTATAACGGTTACTTCCAGGAATACAACTTAAGCATTGATGCTCACAATGAATTATCTTGGTCTTTAGGACGCCAGTTCAATCTTTTGACTGTGACCATGGATAAGGCATCATGA

Predicted protein sequences of Glyma02g36960

Limit To All Plant Sequences

>Glyma02g36960.1   sequence type=predicted peptide   gene model=Glyma02g36960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNQSSSPSLLCASFNQDHSYFAVGTRDGVRIFDANTGRLCYERAVGAFVIAEMLFSSNLLAIVGAGHQPSLSPRRLCLFNTTTGAALRELNFLTSILAVRMNRQRLIVILQDKAYIYEINSLTILDTIDTVPNIKGLCAFSPSLDACYLALPASTTKGSALLYNVMECHLHCEIEAHRSPLAAMVLSSNGMYIATASEQGTIIRVHLVSDATKSYSFRRGTYPSTIFSVSFGPSKRLPDILAASSSSGSIHLFTLGFASRPSSKRSSGFLGSIIPDAVHDVLDPAHHHVLHNAVPAGVKSYAVIRKVENVTNSSSSELLACRAIMSVITYNGYFQEYNLSIDAHNELSWSLGRQFNLLTVTMDKAS*

>Glyma02g36960.3   sequence type=predicted peptide   gene model=Glyma02g36960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFSSNLLAIVGAGHQPSLSPRRLCLFNTTTGAALRELNFLTSILAVRMNRQRLIVILQDKAYIYEINSLTILDTIDTVPNIKGLCAFSPSLDACYLALPASTTKGSALLYNVMECHLHCEIEAHRSPLAAMVLSSNGMYIATASEQGTIIRVHLVSDATKSYSFRRGTYPSTIFSVSFGPSKRLPDILAASSSSGSIHLFTLGFASRPSSKRSSGFLGSIIPDAVHDVLDPAHHHVLHNAVPAGVKSYAVIRKVENVTNSSSSELLACRAIMSVITYNGYFQEYNLSIDAHNELSWSLGRQFNLLTVTMDKAS*

>Glyma02g36960.4   sequence type=predicted peptide   gene model=Glyma02g36960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTNQSSSPSLLCASFNQDHSYFAVGTRDGVRIFDANTGRLCYERAVGAFVIAEMLFSSNLLAIVGAGHQPSLSPRRLCLFNTTTGAALRELNFLTSILAVRMNRQRLIVILQDKAYIYEINSLTILDTIDTVPNIKGLCAFSPSLDACYLALPASTTKGSALLYNVMECHLHCEIEAHRSPLAAMVLSSNGMYIATASEQGTIIRVHLVSDATKSYSFRRGTYPSTIFSVSFGPSKRLPDILAASSSSGSIHLFTLGFASRPSSSKRSSGFLGSIIPDAVHDVLDPAHHHVLHNAVPAGVKSYAVIRKVENVTNSSSSELLACRAIMSVITYNGYFQEYNLSIDAHNELSWSLGRQFNLLTVTMDKAS*

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