Glyma02g36880 - SoyBase

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Report for Sequence Feature Glyma02g36880

Feature Type:	gene_model
Chromosome:	Gm02
Start:	42263024
stop:	42265866
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g36880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G16060	AT	Annotation by Michelle Graham. TAIR10: ARIA-interacting double AP2 domain protein \| chr1:5508563-5511609 FORWARD LENGTH=345	SoyBase	E_val: 1.00E-106	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009887	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ morphogenesis	SoyBase	N/A	ISS
GO:0010187	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination	SoyBase	N/A	ISS
GO:0040008	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR11795	Panther	PROTEIN KINASE	JGI		ISS
PTHR11795:SF332	Panther		JGI		ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_G7JFH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AP2 domain-containing transcription factor n=1 Tax=Medicago truncatula RepID=G7JFH5_MEDTR	SoyBase	E_val: 3.00E-169	ISS
UniRef100_UPI0002337561	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337561 related cluster n=1 Tax=unknown RepID=UPI0002337561	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g36880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g36880

Paralog	Evidence	Comments
Glyma17g07860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g36880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g207100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g36880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g36880

Limit To All Plant Sequences

>Glyma02g36880.2   sequence type=CDS   gene model=Glyma02g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAAAATCACAGCTGCGTACCCAGAAAAACAATGCTACTAATGACGATATTAATCTTAACGCAACCAACACTGTAATCACCAAGGTGAAACGAACAAGGAGAAGTGTCCCTAGAGACTCCCCACCTCAACGCAGCTCAATATACCGAGGAGTCACTAGGCACCGATGGACTGGCCGATACGAAGCTCATTTGTGGGACAAGCATTGCTGGAATGAATCACAGAATAAAAAAGGACGACAAGTCTATCTTGGCGCTTATGATAATGAAGAGGCAGCAGCACATGCTTATGATCTAGCAGCACTGAAATACTGGGGTCAAGATACCATTCTTAATTTTCCGTTATCAAACTACCTGAATGAACTGAAAGAAATGGAGGGTCAATCACGGGAAGAGTATATCGGATCGCTGAGGAGGAAAAGCAGTGGTTTTTCTAGGGGGATTTCTAAATACAGAGGTGTTGCAAGGCATCATCATAACGGAAGGTGGGAGGCTCGGATTGGCAAAGTTTTTGGCAATAAATATCTTTATCTCGGAACTTACGCTACCCAAGAAGAAGCTGCTACTGCCTATGACCTGGCAGCTATAGAATACCGTGGACTCAATGCTGTCACCAATTTCGATCTCAGCCGTTACATTAAGTGGCTTAAGCCCAACAACACCAACAGCAACAATGACCAGATTAGTATTAATCTCACTAACATAAATAATAATTGCACTAACAACTTCATCCCAAACCCTGATCAAGAACAAGAAGTTAGTTTCTTCCACAACCAGGATTCACTCAATAATACTATTGTAGAGGAAGCCACGTTGGTGCCACATCAGCCTCGTCCAGCAAGTGCCACGTTAGCATTGGAGCTTCTACTTCAGTCATCCAAGTTCAAGGAAATGGTGGAAATGACATCCGTGGCCAATCTTTCAACACAGATGGAATCTGATCAGTTGCCACAGTGCACATTTCCTGATCACATTCAGACATACTTTGAGTATGAAGATTCCAATAAATATGAGGAAGGGGATGATCTCCTGTTCAAGTTCAGCGAGTTCAGCTCCATTGTGCCGTTTTACCATTGTGACGAGTTCGAGAGTTGA

Predicted protein sequences of Glyma02g36880

Limit To All Plant Sequences

>Glyma02g36880.2   sequence type=predicted peptide   gene model=Glyma02g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKKSQLRTQKNNATNDDINLNATNTVITKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKHCWNESQNKKGRQVYLGAYDNEEAAAHAYDLAALKYWGQDTILNFPLSNYLNELKEMEGQSREEYIGSLRRKSSGFSRGISKYRGVARHHHNGRWEARIGKVFGNKYLYLGTYATQEEAATAYDLAAIEYRGLNAVTNFDLSRYIKWLKPNNTNSNNDQISINLTNINNNCTNNFIPNPDQEQEVSFFHNQDSLNNTIVEEATLVPHQPRPASATLALELLLQSSKFKEMVEMTSVANLSTQMESDQLPQCTFPDHIQTYFEYEDSNKYEEGDDLLFKFSEFSSIVPFYHCDEFES*

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