SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G39440 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:16468220-16469113 REVERSE LENGTH=162 | SoyBase | E_val: 9.00E-49 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR21726 | Panther | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED | JGI | ISS | |
| PTHR21726:SF5 | Panther | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5) | JGI | ISS | |
| PF08615 | PFAM | Ribonuclease H2 non-catalytic subunit (Ylr154p-like) | JGI | ISS | |
| UniRef100_B9SWR4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative n=1 Tax=Ricinus communis RepID=B9SWR4_RICCO | SoyBase | E_val: 1.00E-50 | ISS |
| UniRef100_I1JGT0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JGT0_SOYBN | SoyBase | E_val: 7.00E-128 | ISS |
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Glyma02g36830 not represented in the dataset |
Glyma02g36830 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g206800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g36830.1 sequence type=CDS gene model=Glyma02g36830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTTACAAAGCTTGGTGGATTGAGTTTAGAGCCAAAATCCGTGCCTCCTCCAAAGCGAACAGGGTGGATTGGAAGAGGAAATTGTCACATGGAAAAGGCCACCATAGATCTGAAGCGCGATGGAAAGGATCTGAGCGGTCGCGTTCATCAACTCCCCTGCTGCGTCAAGCACGACGGTCCCGCCTCCGTTTCCCACTATTTCAAACCCAAACACAAAGGTGTTGGGGAAGACGAGGGTTTACCGTTACAAGAGGCTCATTTTAGAGGCAGGTTACTCCAAGGAACAACACTCCCTCTTCCGCACGGTTACTCTGGTTTTGTCTTGAGTAAGAGTTCGCCTCCCACCTCCGACGAAAACTCTCACTCTTGGGACACCAAAGCAACGTTTCAGGACATCACGTATTGGAACCATGACTACTCCCCTTCCCAGAATGATGAATTATTCCGAGCTTTTCATTGGCTTACTGTCGCAAAAGCTCTGCATAATCCCGTGACACCTGAGGAGTTAGCTTCGTCTTCTGTTACACTCTAG
>Glyma02g36830.1 sequence type=predicted peptide gene model=Glyma02g36830 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MFTKLGGLSLEPKSVPPPKRTGWIGRGNCHMEKATIDLKRDGKDLSGRVHQLPCCVKHDGPASVSHYFKPKHKGVGEDEGLPLQEAHFRGRLLQGTTLPLPHGYSGFVLSKSSPPTSDENSHSWDTKATFQDITYWNHDYSPSQNDELFRAFHWLTVAKALHNPVTPEELASSSVTL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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