SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G24120 | AT | Annotation by Michelle Graham. TAIR10: DNA/RNA polymerases superfamily protein | chr2:10249358-10254530 REVERSE LENGTH=993 | SoyBase | E_val: 4.00E-107 | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003899 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR10102 | Panther | T3/T7 BACTERIOPHAGE-RELATED MITOCHODRIAL DNA-DIRECTED RNA POLYMERASE | JGI | ISS | |
| PF00940 | PFAM | DNA-dependent RNA polymerase | JGI | ISS | |
| UniRef100_I1MT00 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase n=1 Tax=Glycine max RepID=I1MT00_SOYBN | SoyBase | E_val: 8.00E-132 | ISS |
| UniRef100_UPI000233EDA4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EDA4 related cluster n=1 Tax=unknown RepID=UPI000233EDA4 | SoyBase | E_val: 7.00E-133 | ISS |
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Glyma02g36791 not represented in the dataset |
Glyma02g36791 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g07940 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g206400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g36791.1 sequence type=CDS gene model=Glyma02g36791 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATTCTGATAGACAAACAGATGCCACATGCCTTCAAAGTTCAAATGAGAAAGGTAGGTTGGAGGCTGCTACAGTTAACTTGGCCACTAGTGAGAAACCCACTGATGTTTACTCGGAGGCTGCTGCAGACTGTAACAAAGACCCAGCTGCCTATCCAAATGCTTTGTTAGCAAAAGCTTTAATTGATCAGATTGACAGGAAACTGGTCAAACAGACAGTGATGACTTCAGTTTATGGTGTTACTTATGTTGAGGCACGAGAGCAAATAAAGAGAAAATTAGAGGAGAAAGGCCTTATTACTGATGAAAAACCTTTATTTGCTGCAGCTTGCTATGCTGCTAAAGTAACATTAACTGCCCTTGGAGAAATTTTTGGTGCTGCACGTGTCATTATGGGTTGGCTTGGTGATTGTGCAAAGGTAATTGTTTCTGAAAACATGCCTGTTTGTTGGACCACTCCTCTTGGTCTTCCAGCTGTACAACCATACTGTAAAACTGAACGGCATCTGACCATGTGCTCGTCTGCTTCTCAGAGCACAGGCCAAATATTTCAAAGCACTAGTTTTAAGCAACATAGATTTGTAGATGCCAAGAAACAGAGATCTGCGTTTCCTCCAAACTTCGTACATTCACTGGATGGTTCACACATGATGATGACTGTTCTTGCCTGTAGGGATGCTGGCTTATGTTTTGCAGGTTTTAAGACCTCCTTTTACTATCAAAATCCTAAAGCATATTCAAAATTTCCATCTAAATTGCTGGAAGGCTTTGAGACATCATACCCAGGATTAGCTTTCCCTCCACTGCCAGAGAGAAGAGGTGATTTTGACTTGCAGAAGGTTCTTGAGTCTCCATACTTCTTTAACTGA
>Glyma02g36791.1 sequence type=predicted peptide gene model=Glyma02g36791 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHSDRQTDATCLQSSNEKGRLEAATVNLATSEKPTDVYSEAAADCNKDPAAYPNALLAKALIDQIDRKLVKQTVMTSVYGVTYVEAREQIKRKLEEKGLITDEKPLFAAACYAAKVTLTALGEIFGAARVIMGWLGDCAKVIVSENMPVCWTTPLGLPAVQPYCKTERHLTMCSSASQSTGQIFQSTSFKQHRFVDAKKQRSAFPPNFVHSLDGSHMMMTVLACRDAGLCFAGFKTSFYYQNPKAYSKFPSKLLEGFETSYPGLAFPPLPERRGDFDLQKVLESPYFFN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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