Report for Sequence Feature Glyma02g36730
Feature Type: gene_model
Chromosome: Gm02
Start: 42155064
stop: 42157381
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g36730
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G30700 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr4:14962617-14964995 REVERSE LENGTH=792
SoyBase E_val: 0 ISS
GO:0000963 GO-bp
Annotation by Michelle Graham. GO Biological Process: mitochondrial RNA processing
SoyBase N/A ISS
GO:0016554 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytidine to uridine editing
SoyBase N/A ISS
GO:0080156 GO-bp
Annotation by Michelle Graham. GO Biological Process: mitochondrial mRNA modification
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24015:SF145 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7JFJ5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JFJ5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JGR8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGR8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g36730
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g36730
Paralog Evidence Comments
Glyma17g07990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g36730 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g205900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g36730
Coding sequences of Glyma02g36730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g36730.1 sequence type=CDS gene model=Glyma02g36730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATTCGAGGGGGCATTAGCCGCATCAACAAAGCGTGCACCTTCCCTCACCTTGCCGAAACCCACGCGCAGCTCATCCGCAACGGTTACCAGCACGGCCTCGCCACCGTCACTAAGCTCGCCCAGAAGCTCTTCGACGTCGGCGCCACGCGCCACGCACGTGCCCTCTTCTTCTCCGTTCCCAAACCCGACATCTTCCTCTTCAACGTCCTCATCAAAGGCTTCTCCTTCTCCCCCGACGCCTCCTCCATTTCCCTCTACACCCATCTCCGCAAAAACACCACCCTCTCCCCCGACAACTTCACCTATGCATTCGCCATCAACGCTTCCCCCGACGACAACCTCGGCATGTGTCTGCATGCGCACGCTGTCGTCGACGGGTTTGACTCCAACCTCTTTGTCGCGTCCGCGCTCGTTGACTTGTACTTTTTCGCCGTGGGGTATGCTAGGAAGGTTTTTGATAAAATACCCGAGAGAGATACCGTTTTGTGGAACACCATGATTACCGGGTTGGTGAGGAACTGTAGTTATGATGATTCTGTTCAAGGGTTTAAGGACATGGTTGCGCGAGGGGTGCGGTTGGAATCCATCACGTTGGCGACGGTGCTTCCCGCGGTTGCGGAGATGCAAGAGGTGAAAGTTGGGATGGGGATTCAGTGTTTGGCTTTGAAATTGGGATTTCATTTTGATGACTATGTTTTGACGGGTTTGATTTCAGTTTTTTTGAAATGTGGGGATGTTGACACGGCGAGGTTGTTGTTTGGGATGATTAGGAAGCTGGATTTGGTTTCTTACAATGCCATGATTTCTGGGCTTAGTTGTAATGGTGAGACTGAGTGCGCGGTGAATTTTTTTAGAGAATTACTTGTTTCTGGGCAGAGAGTGAGTTCTAGCACAATGGTTGGGTTGATTCCAGTGTCTTCTCCATTTGGGCATTTGCATTTGGCTTGCTGTATTCAGGGGTTTTGTGTGAAGTCTGGTACTGTTTTGCATCCCTCTGTTTCAACTGCACTCACGACTATTTACAGCAGGCTCAATGAAATTGATTTGGCAAGGCAGTTATTTGATGAATCGTTGGAGAAACCTGTAGCTGCTTGGAATGCTCTGATTTCAGGTTACACGCAGAATGGTTTAACGGAGATGGCTATCTCTCTTTTTCAGGAAATGATGGCGACTGAATTTACTCTGAATCCAGTTATGATCACGAGTATTCTTTCAGCTTGTGCTCAACTAGGAGCGCTGAGTTTTGGTAAAACGTTGATTAAAAGCAAAAATCTTGAGCAAAACATTTATGTCTTGACTGCTCTGATTGACATGTATGCCAAGTGTGGGAATATTTCGGAGGCTTGGCAGTTATTTGACTTGACGAGTGAAAAGAATACTGTCACTTGGAATACTAGGATTTTTGGTTATGGGCTCCATGGATATGGGCATGAAGCACTTAAGCTTTTCAATGAGATGTTGCATTTGGGGTTTCAACCATCTAGTGTTACTTTTCTTTCAGTTTTATATGCTTGCAGTCATGCTGGCTTAGTAAGAGAAAGAGATGAAATTTTCCATGCTATGGTTAATAAATACAAGATTGAGCCCTTAGCTGAGCATTATGCGTGCATGGTGGATATTCTGGGACGAGCTGGGCAATTAGAAAAGGCATTGGAATTTATAAGGAGAATGCCTGTTGAGCCAGGTCCTGCAGTGTGGGGTACATTGCTTGGCGCTTGCATGATTCACAAAGACACAAACTTGGCCCGGGTGGCTTCAGAAAGGCTATTTGAACTGGATCCAGGGAATGTAGGATACTATGTCTTACTTTCTAATATATACTCTGTGGAGAGAAACTTCCGAAAGGCTGCCTCAGTACGGGAAGTAGTTAAGAAAATAAATTTGTCAAAGACTCCGGGGTGCACTGTAATTGAGGTTAATGGGACCCCAAACATCTTTGTATGTGGTGATCGTTCTCATTCTCAAACAACAGCTATCTATGCAAAGCTGGAGGAGTTAACGGGCAAGATGAGGGAGATGGGGTATCAGTCAGAGACAGTCACTGCCTTGCATGATGTGGAAGAAGAAGAAAAGGAACTCATGTTTAATGTTCTTAGTGAGAAGTTAGCTATTGCTCTTGGCCTTATTACAACTGAACCTGTTTGTTTAGATTGTCACGCTGCAACTAAGTTTATTTCAAAGATCACAGAAAGGGTAATTGTAGTGAGGGATGCTAACAGATTCCACCATTTCAAAGATGGGATCTGTTCTTGTGGTGATTATTGGTGA
Predicted protein sequences of Glyma02g36730
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g36730.1 sequence type=predicted peptide gene model=Glyma02g36730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIRGGISRINKACTFPHLAETHAQLIRNGYQHGLATVTKLAQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSPDASSISLYTHLRKNTTLSPDNFTYAFAINASPDDNLGMCLHAHAVVDGFDSNLFVASALVDLYFFAVGYARKVFDKIPERDTVLWNTMITGLVRNCSYDDSVQGFKDMVARGVRLESITLATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFLKCGDVDTARLLFGMIRKLDLVSYNAMISGLSCNGETECAVNFFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTVLHPSVSTALTTIYSRLNEIDLARQLFDESLEKPVAAWNALISGYTQNGLTEMAISLFQEMMATEFTLNPVMITSILSACAQLGALSFGKTLIKSKNLEQNIYVLTALIDMYAKCGNISEAWQLFDLTSEKNTVTWNTRIFGYGLHGYGHEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVRERDEIFHAMVNKYKIEPLAEHYACMVDILGRAGQLEKALEFIRRMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFRKAASVREVVKKINLSKTPGCTVIEVNGTPNIFVCGDRSHSQTTAIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVLSEKLAIALGLITTEPVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
