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Report for Sequence Feature Glyma02g36720

Feature Type:gene_model
Chromosome:Gm02
Start:42148940
stop:42154409
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g36720
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17420AT Annotation by Michelle Graham. TAIR10: Cellulose synthase family protein | chr5:5736859-5741407 REVERSE LENGTH=1026 SoyBaseE_val: 0ISS
GO:0009832GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis SoyBaseN/AISS
GO:0009834GO-bp Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis SoyBaseN/AISS
GO:0010089GO-bp Annotation by Michelle Graham. GO Biological Process: xylem development SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010400GO-bp Annotation by Michelle Graham. GO Biological Process: rhamnogalacturonan I side chain metabolic process SoyBaseN/AISS
GO:0010413GO-bp Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process SoyBaseN/AISS
GO:0016926GO-bp Annotation by Michelle Graham. GO Biological Process: protein desumoylation SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0042546GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis SoyBaseN/AISS
GO:0044036GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process SoyBaseN/AISS
GO:0045492GO-bp Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0016759GO-mf Annotation by Michelle Graham. GO Molecular Function: cellulose synthase activity SoyBaseN/AISS
GO:0016760GO-mf Annotation by Michelle Graham. GO Molecular Function: cellulose synthase (UDP-forming) activity SoyBaseN/AISS
PTHR13301Panther X-BOX TRANSCRIPTION FACTOR-RELATED JGI ISS
PTHR13301:SF24Panther JGI ISS
PF03552PFAM Cellulose synthase JGI ISS
UniRef100_G7JFJ6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cellulose synthase catalytic subunit n=1 Tax=Medicago truncatula RepID=G7JFJ6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JGR7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGR7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g36720
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g36720
ParalogEvidenceComments
Glyma17g08000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g36720 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g205800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g36720
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g36720
>Glyma02g36720.1   sequence type=CDS   gene model=Glyma02g36720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCCAGCGCTGGACTGGTCGCTGGTTCTCACAATCGCAACGAGCTCGTTGTTATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGGCAGGTGTGTGAGATATGTGGCGATGATGTGGGACTCACCGTGGATGGAGACTTGTTTGTGGCCTGCAATGAGTGTGGTTTTCCGGCGTGCCGACCATGCTATGAGTATGAAAGAAGGGAAGGGAGACAAGTTTGTCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGCCCGCGGGTTGAGGGAGATGATGACGAGGAGGATGTGGATGATATTGAACATGAATTTAACATCGAGGAGCAGAACAAGCATAACCATTCTGCTGAAGCCATGCTGCATGGGAAGATGAGTTACGGAAGAGGTCCTGAAGATGATGAGAATGCTCAATTCCCAGCTGTTATTGCTGGTGGTCGCTCTCGGCCTGTTAGTGGGGAGTTACCAATAGCATCTCATTATGGGGATCAAATGTTAGCTTCTTCACTGCAAAATCGATCGCACCCATATCTGGCGTCAGATCCTCGAAATGGAAAATTGGATGAAGCCAAAGAGGATAGAATGGATGACTGGAAGTTGCAACAAGGCAATTTGGGGCATGAACCTGATGAAGATCCAGATGCAGCCATGTTAGATGAAGCAAGGCAACCGCTGTCAAGGAAGGTACCAATAGCATCCAGCAAAGTGAATCCATATAGGATGGTGATCGTGGCACGACTTGTTATCCTTGCATTCTTCCTCAGATATAGACTTATGAATCCTGTACATGATGCACTGGGGCTGTGGCTAACTTCTATTATATGTGAAATCTGGTTTGCTTTTTCATGGATCCTTGATCAGTTTCCCAAGTGGTTTCCCATTGACCGAGAGACATACCTTGATCGTCTTTCAATCAGGTATGAGCGTGAAGGTGAACCCAACATGCTTGCTCCTGTGGATGTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTTTGGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCAGTTGATAAGATATCCTGTTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAAGCCCTGTCAGAAACTGCAGAGTTTGCTAGGAAGTGGGTGCCATTCTGCAAGAAATTTTCTATAGAACCTAGAGCACCAGAGATGTACTTCAGTGAGAAAGTTGATTACCTCAAGGACAAGGTGCAGCCCACCTTTGTTAAGGATCGTCGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTGGCAAAAGCTCAGAAGGTTCCTCAAGGAGGATGGATTATGCAGGATGGGACACCATGGCCTGGAAATAATACTAAGGATCATCCTGGTATGATTCAAGTCTTTCTTGGTCACAGTGGAGGTCATGATACTGAAGGAAACGAGCTTCCTCGTCTTGTTTATGTTTCCCGAGAGAAAAGGCCTGGATTCCAACACCACAAGAAAGCTGGTGCTATGAATGCTTTGATTCGGGTTTCCGCTGTGCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATGTCAATAACAGCAAGGCTGCTCGAGAGGCCATGTGCTTTTTAATGGACCCCCAAACTGGGAAGAAGGTCTGCTATGTCCAATTTCCTCAAAGATTTGATGGCATTGATAGGCATGATCGTTATGCTAATAGAAACACGGTTTTCTTTGATATTAACATGAAGGGCCTAGATGGTATTCAGGGTCCTGCATATGTTGGCACAGGGTGCGTATTTAGGAGGCAAGCTTTATATGGCTACAATCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGCCCATGTTTTGGAAAGCGCAAGAAGGTTAAGTATGAAGGGAATGATGCAAATGGAGAGGCAGCAAGCCTCAGAGGAATGGATGATGACAAAGAAGTGCTGATGTCCCAGATGAATTTTGAAAAGAAATTTGGACAGTCATCTATTTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCCGCAAGTCCAGCAAGCCAACTTAAAGAAGCCATTCATGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGAATAGAGCTAGGTTGGATTTACGGGTCTATTACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTATTGCATGCCAAAGAGAGCAGCATTCAAGGGTACTGCTCCCATCAACTTGTCAGATAGGCTTAACCAGGTGCTTCGTTGGGCACTAGGCTCCATAGAGATCTTCTTCAGTCGTCATTGCCCTTTATGGTATGGTTATAAGGAAGGGAAGTTGAAGTGGCTTGAGAGATTTGCCTACGCAAACACAACTGTCTACCCCTTCACCTCCATACCTCTAGTTGCCTACTGTGTTCTTCCTGCTGTTTGTTTACTCACTGATAAATTCATCATGCCGCCGATAAGCACTTTTGCTGGTTTGTACTTCGTTGCTCTATTCTCTTCAATCATTGCAACTGGTCTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAGCAATTCTGGGTCATTGGTGGTGTGTCAGCACATCTCTTTGCTGTCATACAAGGTCTTCTGAAGGTTTTGGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAGCAGATGATGAAGAATTTGGAGAATTATACACCTTTAAGTGGACTACTCTCCTGATTCCTCCAACCACCATCTTAATAATCAACATTGTTGGGGTTGTTGCTGGAATCTCAGATGCCATAAACAACGGGTACCAATCTTGGGGACCTCTATTTGGAAAACTATTCTTTTCATTTTGGGTGATTGTCCATCTATATCCATTCCTTAAAGGTTTGATGGGTCGCCAAAACCGCACACCCACCATAGTTGTTATATGGTCAGTTCTATTGGCTTCCATTTTCTCCTTGCTTTGGGTAAGAATTGACCCGTTTGTATTAAAAACTAAGGGACCTGATACCAAGCTATGTGGAATCAACTGTTGA
Predicted protein sequences of Glyma02g36720
>Glyma02g36720.1   sequence type=predicted peptide   gene model=Glyma02g36720   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDDVGLTVDGDLFVACNECGFPACRPCYEYERREGRQVCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIEEQNKHNHSAEAMLHGKMSYGRGPEDDENAQFPAVIAGGRSRPVSGELPIASHYGDQMLASSLQNRSHPYLASDPRNGKLDEAKEDRMDDWKLQQGNLGHEPDEDPDAAMLDEARQPLSRKVPIASSKVNPYRMVIVARLVILAFFLRYRLMNPVHDALGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFEALSETAEFARKWVPFCKKFSIEPRAPEMYFSEKVDYLKDKVQPTFVKDRRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPAYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGKRKKVKYEGNDANGEAASLRGMDDDKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSASPASQLKEAIHVISCGYEDKTEWGIELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGYKEGKLKWLERFAYANTTVYPFTSIPLVAYCVLPAVCLLTDKFIMPPISTFAGLYFVALFSSIIATGLLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC*






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