SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57880 | AT | Annotation by Michelle Graham. TAIR10: multipolar spindle 1 | chr5:23443977-23446439 FORWARD LENGTH=385 | SoyBase | E_val: 7.00E-123 | ISS |
| GO:0000212 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic spindle organization | SoyBase | N/A | ISS |
| GO:0007059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome segregation | SoyBase | N/A | ISS |
| GO:0007140 | GO-bp | Annotation by Michelle Graham. GO Biological Process: male meiosis | SoyBase | N/A | ISS |
| GO:0009553 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac development | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0048236 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type spore development | SoyBase | N/A | ISS |
| GO:0051026 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chiasma assembly | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_F4KDF5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Multipolar spindle 1 n=1 Tax=Arabidopsis thaliana RepID=F4KDF5_ARATH | SoyBase | E_val: 3.00E-120 | ISS |
| UniRef100_UPI000233720F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233720F related cluster n=1 Tax=unknown RepID=UPI000233720F | SoyBase | E_val: 0 | ISS |
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Glyma02g36670 not represented in the dataset |
Glyma02g36670 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g08040 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g205400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g36670.3 sequence type=transcript gene model=Glyma02g36670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGAACGAAGATGCAAGAAGGAGCGATGAATCGATGAAGCTTGCGGTGGCGATATCGCTTCTGAGATCAAAGGTTTTGAAAAGTGTAAAGGAGTCCAATGCGCTATCTCCTTCACAATCTGACGCTCTTCTCCGTTGGAAGCGAAAGGCCAAGGAAAGAAAGCAAGAGATCCTGAGGCTTCGAGAAGATCTCAAAGACGCTCAAGATGCTTCGCACTGCGATCTCTTCCCTGAGAGTGCTGCTTGCAAGTGTTATTTCTTCGACAATTTCGGAGAATTAAGCCCTATGCATCATGGAACTGGTTTTGACAGCAGATTCAGCGACGTCCTTCGACGCAGATTTCTAAGACAAGTGCGATTTAAGGAAAGGAGGAAAAGAGTAGGTTCTTCTTCTTCCTCTTCAAGTCGGCTTTCTTTAGGCTTAATTGAGGAGGATGACACAGAGCAGCTTAGGGCCTCCGTTGATTTTATCTTGGAAATCTGTGACTCTGTATCACCGGTGGATGATTCCAAGTTTGCAAATCTGGCACATCAAGCTGTAGACTTTATATTGGTTACATTGAAGAATTTTTTATCTATGGGAAGGAACCTGGAACTTGTTGAAGGAATTATCAACAGCCTAGTTACACGTTTGATTAGGCAGATGTGCTCGTCCTTGTCAGAAACTGGGTCTCAACACACGGGAACCAATGCTCAATTTTGTATTCAACATTTGATCCGTAAACTTGGAAGTGAGCCTTATATTGGTCAGCGGGCAATACTTTCAGTTTGTCAAAGAATTTTGGTACTAGCTGAACGTTTGCTTTTCTCTGATCCTTTTGATGATGGCTTTCCTAACATGCATGAAAGTATGTTCATAATGTTTTGTGGAAAGGAATAATGGTTTTGAAGACATAACATGGATCTAATTTTTATTTGTGGGGATGTCAGGATCCAGCTTATCGAGTTCTTGGTGACGGATTACTTATCAGAGTGGTCAAAAGCTGAAGATTTTGACAACTTGCTCCTTGAAGATTGGGTGACATCAATTGTCCAGTTAAGAAAAGCATTAGAACTTCTGGAAAGCAGAAATGGACTTTATGCTCTCTATATGGACCGAGTCACAGGTGAATTGGCAAAACAACTTGGCGGTGTCTCATCGTTTCTGAAGCTTAAACCGGATATTATTAATTGTCTCTTTCGCTAAACATGATTGGTCCATATAGGAAAAACTGTTACTGAGAAAAATGAAAAAACGAATGTGGTGCCTGGTAATGGAACTTATGTAAGCTAGAACCTGCTCATGGTCATTCACGTCTGCTTGGTGAGTAGCATTTGCTCTTGGAGTTTGGATTATAATTTGTGCATCTCA
>Glyma02g36670.2 sequence type=CDS gene model=Glyma02g36670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGAACGAAGATGCAAGAAGGAGCGATGAATCGATGAAGCTTGCGGTGGCGATATCGCTTCTGAGATCAAAGGTTTTGAAAAGTGTAAAGGAGTCCAATGCGCTATCTCCTTCACAATCTGACGCTCTTCTCCGTTGGAAGCGAAAGGCCAAGGAAAGAAAGCAAGAGATCCTGAGGCTTCGAGAAGATCTCAAAGACGCTCAAGATGCTTCGCACTGCGATCTCTTCCCTGAGAGTGCTGCTTGCAAGTGTTATTTCTTCGACAATTTCGGAGAATTAAGCCCTATGCATCATGGAACTGGTTTTGACAGCAGATTCAGCGACGTCCTTCGACGCAGATTTCTAAGACAAGTGCGATTTAAGGAAAGGAGGAAAAGAGTAGGTTCTTCTTCTTCCTCTTCAAGTCGGCTTTCTTTAGGCTTAATTGAGGAGGATGACACAGAGCAGCTTAGGGCCTCCGTTGATTTTATCTTGGAAATCTGTGACTCTGTATCACCGGTGGATGATTCCAAGTTTGCAAATCTGGCACATCAAGCTGTAGACTTTATATTGGTTACATTGAAGAATTTTTTATCTATGGGAAGGAACCTGGAACTTGTTGAAGGAATTATCAACAGCCTAGTTACACGTTTGATTAGGCAGATGTGCTCGTCCTTGTCAGAAACTGGGTCTCAACACACGGGAACCAATGCTCAATTTTGTATTCAACATTTGATCCGTAAACTTGGAAGTGAGCCTTATATTGGTCAGCGGGCAATACTTTCAGTTTGTCAAAGAATTTTGGTACTAGCTGAACGTTTGCTTTTCTCTGATCCTTTTGATGATGGCTTTCCTAACATGCATGAAAGTATGTTCATAATGATCCAGCTTATCGAGTTCTTGGTGACGGATTACTTATCAGAGTGGTCAAAAGCTGAAGATTTTGACAACTTGCTCCTTGAAGATTGGGTGACATCAATTGTCCAGTTAAGAAAAGCATTAGAACTTCTGGAAAGCAGAAATGGACTTTATGCTCTCTATATGGACCGAGTCACAGGTGAATTGGCAAAACAACTTGGCGGTGTCTCATCGTTTCTGAAGCTTAAACCGGATATTATTAATTGTCTCTTTCGCTAA >Glyma02g36670.3 sequence type=CDS gene model=Glyma02g36670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAGAACGAAGATGCAAGAAGGAGCGATGAATCGATGAAGCTTGCGGTGGCGATATCGCTTCTGAGATCAAAGGTTTTGAAAAGTGTAAAGGAGTCCAATGCGCTATCTCCTTCACAATCTGACGCTCTTCTCCGTTGGAAGCGAAAGGCCAAGGAAAGAAAGCAAGAGATCCTGAGGCTTCGAGAAGATCTCAAAGACGCTCAAGATGCTTCGCACTGCGATCTCTTCCCTGAGAGTGCTGCTTGCAAGTGTTATTTCTTCGACAATTTCGGAGAATTAAGCCCTATGCATCATGGAACTGGTTTTGACAGCAGATTCAGCGACGTCCTTCGACGCAGATTTCTAAGACAAGTGCGATTTAAGGAAAGGAGGAAAAGAGTAGGTTCTTCTTCTTCCTCTTCAAGTCGGCTTTCTTTAGGCTTAATTGAGGAGGATGACACAGAGCAGCTTAGGGCCTCCGTTGATTTTATCTTGGAAATCTGTGACTCTGTATCACCGGTGGATGATTCCAAGTTTGCAAATCTGGCACATCAAGCTGTAGACTTTATATTGGTTACATTGAAGAATTTTTTATCTATGGGAAGGAACCTGGAACTTGTTGAAGGAATTATCAACAGCCTAGTTACACGTTTGATTAGGCAGATGTGCTCGTCCTTGTCAGAAACTGGGTCTCAACACACGGGAACCAATGCTCAATTTTGTATTCAACATTTGATCCGTAAACTTGGAAGTGAGCCTTATATTGGTCAGCGGGCAATACTTTCAGTTTGTCAAAGAATTTTGGTACTAGCTGAACGTTTGCTTTTCTCTGATCCTTTTGATGATGGCTTTCCTAACATGCATGAAAGTATGTTCATAATGTTTTGTGGAAAGGAATAA
>Glyma02g36670.2 sequence type=predicted peptide gene model=Glyma02g36670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAENEDARRSDESMKLAVAISLLRSKVLKSVKESNALSPSQSDALLRWKRKAKERKQEILRLREDLKDAQDASHCDLFPESAACKCYFFDNFGELSPMHHGTGFDSRFSDVLRRRFLRQVRFKERRKRVGSSSSSSSRLSLGLIEEDDTEQLRASVDFILEICDSVSPVDDSKFANLAHQAVDFILVTLKNFLSMGRNLELVEGIINSLVTRLIRQMCSSLSETGSQHTGTNAQFCIQHLIRKLGSEPYIGQRAILSVCQRILVLAERLLFSDPFDDGFPNMHESMFIMIQLIEFLVTDYLSEWSKAEDFDNLLLEDWVTSIVQLRKALELLESRNGLYALYMDRVTGELAKQLGGVSSFLKLKPDIINCLFR* >Glyma02g36670.3 sequence type=predicted peptide gene model=Glyma02g36670 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAENEDARRSDESMKLAVAISLLRSKVLKSVKESNALSPSQSDALLRWKRKAKERKQEILRLREDLKDAQDASHCDLFPESAACKCYFFDNFGELSPMHHGTGFDSRFSDVLRRRFLRQVRFKERRKRVGSSSSSSSRLSLGLIEEDDTEQLRASVDFILEICDSVSPVDDSKFANLAHQAVDFILVTLKNFLSMGRNLELVEGIINSLVTRLIRQMCSSLSETGSQHTGTNAQFCIQHLIRKLGSEPYIGQRAILSVCQRILVLAERLLFSDPFDDGFPNMHESMFIMFCGKE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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