SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G57900 | AT | Annotation by Michelle Graham. TAIR10: SKP1 interacting partner 1 | chr5:23449916-23450915 REVERSE LENGTH=300 | SoyBase | E_val: 2.00E-126 | ISS |
| GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009755 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0019005 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: SCF ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR23125 | Panther | F-BOX/LEUCINE RICH REPEAT PROTEIN | JGI | ISS | |
| PTHR23125:SF16 | Panther | gb def: Hypothetical protein AT4g30640 | JGI | ISS | |
| PF00560 | PFAM | Leucine Rich Repeat | JGI | ISS | |
| UniRef100_G7JFK8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: F-box protein SKIP1 n=1 Tax=Medicago truncatula RepID=G7JFK8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JGR1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGR1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g36660 not represented in the dataset |
Glyma02g36660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g205200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g36660.2 sequence type=transcript gene model=Glyma02g36660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTGGAAACACTGGTGTGAGAAACAGAGAGGACTGAGTTCTGAGTCTAATATCCAATCTGAATCCGAACATAACATTCAGAAGGAAGAAGAAGAAGGTGTGTTGGAGAATGAAAACTGAAACAGAGCCAAATGAAACCGAGTCAGATTGGAGCGAGTTGACTCGCGAGTGCCTCATCAACATCCTCTCTCGACTCAGCGTCGAGGATCGATGGCGCGGCACCATGCTCGTTTGCAAGTCATGGTTCAGCGTCTTCAAGGAACCCTCTCTTCACTTCGTCTTCAACCTCGACCCTCAATTCGACTCGCCCACCGAATCAACTCGCTGGTGGACCCCCGAGTTCGAGGCCAAGATCGATAACATGCTTCGATCTGTCGTCGAATGGGCCCAATCCTCTCTCACCCATATACGCATTCGCCACTGTTCTGATCGTTCTCTCGCCCTCGTCGCCCAAAGAAGCTGTCCTCGTGTTACCGATGATTCTATCTCTAGGATAGCTTTGAGTTGTCCGAAGCTTAGGGAATTGGATATCAGCTATTGTTATGAGATAACCCATGAATCGTTGGTGCTGATTGGAAGAAATTGTCCCAACCTTAAGGTTCTCAAAAGAAATCTCATGAATTGGCTTGATCCTTCCCAACACCGAGGGATTGTTCCTGACGATTATCTAAATGCTTGTCCGCAAGATGGAGACGATGAGGCTGCTGCAATTGCTAATTCCATGCCTGGTCTAGAGCAGCTTGAGATTAGGTTCTCCAAGTTAACAGCTAAGGGCCTCAATTCCATATGTCAGGGATGTCCCAACCTTGAGTTCTTGGATTTGTCTGGGTGTGCTAACTTGACTAGTCGAGACATTGCAAATGCATCTTCTAGTTTGGTGCACTTGAAAGAAATTAAAAAGCCTAATTTCTATATCCCCAGGTCTGTCTTCCACACTGAAAGGTATGGTCATTGGAGTTTGTATGATGAGAGATTTCAAACGGATATTTTCCAAATCTGAGCAGTGATGGGAAGATCGATCTAAGATGTAAACACTGAGTTCATCACTTAATCTTCTTTCCGCTGCTTTTTGGATATCTTAGCAGGGTCTCTATGGTTATTTTCACAGTCAAATATGTATAGTAGAAATTATAATCTCTGTCTATGTAGTTATATGTTGTTTTCCTTCCATCATTTTGATGTATTTGCAATGTATTTGTGTTGTCTCAAGTTCTCATAATAGATTTATCTCGTAATATTGTAATTATTTCTTTTACCTTTTGGATGCTGCATTACTTATATCTTTCTCCTAGCAACCTTCCATAAAATGTCTCAGGAATCTATGTTCTTAAATGCATTATTTTTCTTACTGGCCTTA
>Glyma02g36660.1 sequence type=CDS gene model=Glyma02g36660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAACTGAAACAGAGCCAAATGAAACCGAGTCAGATTGGAGCGAGTTGACTCGCGAGTGCCTCATCAACATCCTCTCTCGACTCAGCGTCGAGGATCGATGGCGCGGCACCATGCTCGTTTGCAAGTCATGGTTCAGCGTCTTCAAGGAACCCTCTCTTCACTTCGTCTTCAACCTCGACCCTCAATTCGACTCGCCCACCGAATCAACTCGCTGGTGGACCCCCGAGTTCGAGGCCAAGATCGATAACATGCTTCGATCTGTCGTCGAATGGGCCCAATCCTCTCTCACCCATATACGCATTCGCCACTGTTCTGATCGTTCTCTCGCCCTCGTCGCCCAAAGTTGCCCAAACCTTGAGGTGTTGTTTATCAGAAGCTGTCCTCGTGTTACCGATGATTCTATCTCTAGGATAGCTTTGAGTTGTCCGAAGCTTAGGGAATTGGATATCAGCTATTGTTATGAGATAACCCATGAATCGTTGGTGCTGATTGGAAGAAATTGTCCCAACCTTAAGGTTCTCAAAAGAAATCTCATGAATTGGCTTGATCCTTCCCAACACCGAGGGATTGTTCCTGACGATTATCTAAATGCTTGTCCGCAAGATGGAGACGATGAGGCTGCTGCAATTGCTAATTCCATGCCTGGTCTAGAGCAGCTTGAGATTAGGTTCTCCAAGTTAACAGCTAAGGGCCTCAATTCCATATGTCAGGGATGTCCCAACCTTGAGTTCTTGGATTTGTCTGGGTGTGCTAACTTGACTAGTCGAGACATTGCAAATGCATCTTCTAGTTTGGTGCACTTGAAAGAAATTAAAAAGCCTAATTTCTATATCCCCAGGTCTGTCTTCCACACTGAAAGGTATGGTCATTGGAGTTTGTATGATGAGAGATTTCAAACGGATATTTTCCAAATCTGA >Glyma02g36660.2 sequence type=CDS gene model=Glyma02g36660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAACTGAAACAGAGCCAAATGAAACCGAGTCAGATTGGAGCGAGTTGACTCGCGAGTGCCTCATCAACATCCTCTCTCGACTCAGCGTCGAGGATCGATGGCGCGGCACCATGCTCGTTTGCAAGTCATGGTTCAGCGTCTTCAAGGAACCCTCTCTTCACTTCGTCTTCAACCTCGACCCTCAATTCGACTCGCCCACCGAATCAACTCGCTGGTGGACCCCCGAGTTCGAGGCCAAGATCGATAACATGCTTCGATCTGTCGTCGAATGGGCCCAATCCTCTCTCACCCATATACGCATTCGCCACTGTTCTGATCGTTCTCTCGCCCTCGTCGCCCAAAGAAGCTGTCCTCGTGTTACCGATGATTCTATCTCTAGGATAGCTTTGAGTTGTCCGAAGCTTAGGGAATTGGATATCAGCTATTGTTATGAGATAACCCATGAATCGTTGGTGCTGATTGGAAGAAATTGTCCCAACCTTAAGGTTCTCAAAAGAAATCTCATGAATTGGCTTGATCCTTCCCAACACCGAGGGATTGTTCCTGACGATTATCTAAATGCTTGTCCGCAAGATGGAGACGATGAGGCTGCTGCAATTGCTAATTCCATGCCTGGTCTAGAGCAGCTTGAGATTAGGTTCTCCAAGTTAACAGCTAAGGGCCTCAATTCCATATGTCAGGGATGTCCCAACCTTGAGTTCTTGGATTTGTCTGGGTGTGCTAACTTGACTAGTCGAGACATTGCAAATGCATCTTCTAGTTTGGTGCACTTGAAAGAAATTAAAAAGCCTAATTTCTATATCCCCAGGTCTGTCTTCCACACTGAAAGGTATGGTCATTGGAGTTTGTATGATGAGAGATTTCAAACGGATATTTTCCAAATCTGA
>Glyma02g36660.1 sequence type=predicted peptide gene model=Glyma02g36660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKTETEPNETESDWSELTRECLINILSRLSVEDRWRGTMLVCKSWFSVFKEPSLHFVFNLDPQFDSPTESTRWWTPEFEAKIDNMLRSVVEWAQSSLTHIRIRHCSDRSLALVAQSCPNLEVLFIRSCPRVTDDSISRIALSCPKLRELDISYCYEITHESLVLIGRNCPNLKVLKRNLMNWLDPSQHRGIVPDDYLNACPQDGDDEAAAIANSMPGLEQLEIRFSKLTAKGLNSICQGCPNLEFLDLSGCANLTSRDIANASSSLVHLKEIKKPNFYIPRSVFHTERYGHWSLYDERFQTDIFQI* >Glyma02g36660.2 sequence type=predicted peptide gene model=Glyma02g36660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKTETEPNETESDWSELTRECLINILSRLSVEDRWRGTMLVCKSWFSVFKEPSLHFVFNLDPQFDSPTESTRWWTPEFEAKIDNMLRSVVEWAQSSLTHIRIRHCSDRSLALVAQRSCPRVTDDSISRIALSCPKLRELDISYCYEITHESLVLIGRNCPNLKVLKRNLMNWLDPSQHRGIVPDDYLNACPQDGDDEAAAIANSMPGLEQLEIRFSKLTAKGLNSICQGCPNLEFLDLSGCANLTSRDIANASSSLVHLKEIKKPNFYIPRSVFHTERYGHWSLYDERFQTDIFQI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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