Glyma02g36580 - SoyBase

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Report for Sequence Feature Glyma02g36580

Feature Type:	gene_model
Chromosome:	Gm02
Start:	42051983
stop:	42053764
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g36580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G57920	AT	Annotation by Michelle Graham. TAIR10: early nodulin-like protein 10 \| chr5:23453634-23454256 FORWARD LENGTH=182	SoyBase	E_val: 2.00E-29	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0009055	GO-mf	Annotation by Michelle Graham. GO Molecular Function: electron carrier activity	SoyBase	N/A	ISS
PF02298	PFAM	Plastocyanin-like domain	JGI		ISS
UniRef100_C6TNK9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TNK9_SOYBN	SoyBase	E_val: 4.00E-143	ISS
UniRef100_Q02917	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Early nodulin-55-2 n=1 Tax=Glycine max RepID=NO552_SOYBN	SoyBase	E_val: 3.00E-84	ISS

Expression Patterns of Glyma02g36580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g36580

Paralog	Evidence	Comments
Glyma17g08110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g36580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g204500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g36580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g36580

Limit To All Plant Sequences

>Glyma02g36580.1   sequence type=CDS   gene model=Glyma02g36580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCTGTTTACCAAATAACGCATCTCCATTTTTGTTTATGCTCTCAATGTGGCTCTTAATTTCCATCTCTGAAGCTGCAAAGTATGTGGTTGGAGGCAGTGAAACCTGGAAGTTTCCTCTCTCAAAACCAGATTCACTCAGCCACTGGGCCAGCTCTCACCGATTCAAAATCGGCGACACTCTCATATTTAAATACGATGAGAGAACAGAGTCAGTGCACGAAGTGAATGAGACGGATTATGAACAATGCAACACGGTGGGGAAAGAACACGTTCTGTTCAACGATGGCAACACCAAGGTGATGCTTACCAAATCTGGATTCAGACACTTCATTAGTGGAAATCAGAGTCATTGCCAAATGGGGTTAAAGCTAATGGTAGTTGTCATGTCAAACAACACCAAAAAGAAACTAATTCATTCACCATCACCATCACCTTCACCATCACCATCACCATCACCTTCACCTTCACCCTCACCTTCACCTTCATTATCATCGCCATCACCTTCACCACTTCCAAATAATCAAGGTGTTACTCGTAGTTCAGGCGCTGAATTCATTGGAGTTATGATGTGGTTGGGGGTGATGATGTTATTGCTTTAA

Predicted protein sequences of Glyma02g36580

Limit To All Plant Sequences

>Glyma02g36580.1   sequence type=predicted peptide   gene model=Glyma02g36580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASCLPNNASPFLFMLSMWLLISISEAAKYVVGGSETWKFPLSKPDSLSHWASSHRFKIGDTLIFKYDERTESVHEVNETDYEQCNTVGKEHVLFNDGNTKVMLTKSGFRHFISGNQSHCQMGLKLMVVVMSNNTKKKLIHSPSPSPSPSPSPSPSPSPSPSPSLSSPSPSPLPNNQGVTRSSGAEFIGVMMWLGVMMLLL*

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