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Report for Sequence Feature Glyma02g36460

Feature Type:gene_model
Chromosome:Gm02
Start:41942518
stop:41948200
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g36460
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G30950AT Annotation by Michelle Graham. TAIR10: fatty acid desaturase 6 | chr4:15057278-15059673 REVERSE LENGTH=448 SoyBaseE_val: 0ISS
GO:0000096GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process SoyBaseN/AISS
GO:0006546GO-bp Annotation by Michelle Graham. GO Biological Process: glycine catabolic process SoyBaseN/AISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0006636GO-bp Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process SoyBaseN/AISS
GO:0006655GO-bp Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process SoyBaseN/AISS
GO:0006733GO-bp Annotation by Michelle Graham. GO Biological Process: oxidoreduction coenzyme metabolic process SoyBaseN/AISS
GO:0006766GO-bp Annotation by Michelle Graham. GO Biological Process: vitamin metabolic process SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0009072GO-bp Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family metabolic process SoyBaseN/AISS
GO:0009106GO-bp Annotation by Michelle Graham. GO Biological Process: lipoate metabolic process SoyBaseN/AISS
GO:0009108GO-bp Annotation by Michelle Graham. GO Biological Process: coenzyme biosynthetic process SoyBaseN/AISS
GO:0009117GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide metabolic process SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009695GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process SoyBaseN/AISS
GO:0010205GO-bp Annotation by Michelle Graham. GO Biological Process: photoinhibition SoyBaseN/AISS
GO:0015994GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll metabolic process SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0016117GO-bp Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process SoyBaseN/AISS
GO:0019216GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of lipid metabolic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0019748GO-bp Annotation by Michelle Graham. GO Biological Process: secondary metabolic process SoyBaseN/AISS
GO:0031408GO-bp Annotation by Michelle Graham. GO Biological Process: oxylipin biosynthetic process SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0044272GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur compound biosynthetic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0045485GO-mf Annotation by Michelle Graham. GO Molecular Function: omega-6 fatty acid desaturase activity SoyBaseN/AISS
PTHR19353Panther FATTY ACID DESATURASE 2 JGI ISS
PF00487PFAM Fatty acid desaturase JGI ISS
UniRef100_I1JGN9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGN9_SOYBN SoyBaseE_val: 0ISS
UniRef100_P48628UniRef Annotation by Michelle Graham. Most informative UniRef hit: Omega-6 fatty acid desaturase, chloroplastic n=1 Tax=Glycine max RepID=FAD6C_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g36460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g36460
ParalogEvidenceComments
Glyma17g08220 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g36460 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g203300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g36460
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g36460
>Glyma02g36460.1   sequence type=CDS   gene model=Glyma02g36460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTGCACGCTCGCTGATTCATTACTCCTATTCAAGGGTTCTTATCAGAAACCAGTTCTGAGGAGAGACATTGCTGCCCGGTACTCCCCGGGTATATTTAGTCTAAACAGTAATGGGCTTATCCAGAAAAGGTTCAGGCGTCAAAGGAATTTTGTTACTAGGAATAAGGTTACTGTCATACATGCCGTGGCAATTCCAGTACAACCAGCTCCGGTGGAAAGTGCGGAGTATAGAAAACAGCTAGCTGAAGACTACGGTTTCAGGCAAGTTGGAGAGCCGCTTCCAGATGATGTTACTTTAAAGGATGTCATCAATTCCCTTCCTAAGGAGGTCTTTGAGATTGATGATGTGAAAGCATGGAAATCTGTTCTGATATCTGTCACTTCTTATGCACTGGGTCTCTTCATGATTTCCAAAGCCCCCTGGTATCTTCTTCCTCTGGCTTGGGTATGGACAGGGACTGCAATAACTGGGTTCTTTGTTATAGGACATGATTGTGCTCACAGATCATTTTCGTCTAACAAATTGGTAGAAGACATTGTTGGAACTCTGGCCTTTATGCCTCTGATTTATCCATATGAGCCTTGGCGATTTAAGCATGACAGGCATCATGCAAAAACAAACATGTTACGTGAAGATACTGCTTGGCACCCTGTTTGGAAGGACGAGTTTGAATCTACTCCACTTTTGAGGAAAGCAATAATATACGGATATGGTCCATTTCGATGTTGGATGTCTATAGCTCACTGGTTGATGTGGCACTTTGATTTGAAGAAGTTCAGACCAAGTGAAGTACCAAGGGTGAAGATAAGTTTGGCTTGTGTTTTTGCCTTTATAGCAATTGGATGGCCATTAATTATTTACAAGACTGGAATCATGGGATGGATAAAATTCTGGTTGATGCCATGGTTGGGCTATCACTTCTGGATGAGTACGTTTACCATGGTACATCATACTGCACCGCATATACCATTCAAATACTCAGAAGAGTGGAATGCTGCGCAAGCACAGCTTAATGGAACTGTTCATTGTGATTATCCTAAATGGATCGAGATCCTATGTCACGATATTAATGTCCATATTCCACACCACATATCCCCGAGGATACCAAGCTATAATTTAAGAGCAGCCCATAAGTCTCTCCAAGAAAACTGGGGACAGTATCTGAATGAGGCTAGTTGGAATTGGAGATTGATGAAGACAATCATGACAGTGTGTCATGTGTACGACAAGGAGCAAAATTATGTTGCCTTCGACGAACTTGCCCCTGAAGATTCTCGTCCAATTACATTTTTGAAGGAAACCATGCCTGATTATGCTTAA
Predicted protein sequences of Glyma02g36460
>Glyma02g36460.1   sequence type=predicted peptide   gene model=Glyma02g36460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACTLADSLLLFKGSYQKPVLRRDIAARYSPGIFSLNSNGLIQKRFRRQRNFVTRNKVTVIHAVAIPVQPAPVESAEYRKQLAEDYGFRQVGEPLPDDVTLKDVINSLPKEVFEIDDVKAWKSVLISVTSYALGLFMISKAPWYLLPLAWVWTGTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHPVWKDEFESTPLLRKAIIYGYGPFRCWMSIAHWLMWHFDLKKFRPSEVPRVKISLACVFAFIAIGWPLIIYKTGIMGWIKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKYSEEWNAAQAQLNGTVHCDYPKWIEILCHDINVHIPHHISPRIPSYNLRAAHKSLQENWGQYLNEASWNWRLMKTIMTVCHVYDKEQNYVAFDELAPEDSRPITFLKETMPDYA*






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