Glyma02g36370 - SoyBase

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Report for Sequence Feature Glyma02g36370

Feature Type:	gene_model
Chromosome:	Gm02
Start:	41825757
stop:	41830385
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g36370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24270	AT	Annotation by Michelle Graham. TAIR10: aldehyde dehydrogenase 11A3 \| chr2:10327109-10329601 REVERSE LENGTH=503	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004028	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-chloroallyl aldehyde dehydrogenase activity	SoyBase	N/A	ISS
GO:0008886	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG2450	KOG	Aldehyde dehydrogenase	JGI		ISS
PTHR11699	Panther	ALDEHYDE DEHYDROGENASE-RELATED	JGI		ISS
PTHR11699:SF29	Panther	ALDEHYDE DEHYDROGENASE 7	JGI		ISS
PF00171	PFAM	Aldehyde dehydrogenase family	JGI		ISS
UniRef100_G7JGT0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7JGT0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JGN1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGN1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g36370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g36370

Paralog	Evidence	Comments
Glyma17g08310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g36370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g202500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g36370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g36370

Limit To All Plant Sequences

>Glyma02g36370.1   sequence type=CDS   gene model=Glyma02g36370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTGGGACTGGACTCTTTGCAGAGATTTTGGATGGAGATGCGTACAAGTACTATGCTGATGGAGAGTGGAAGAAATCTGCTTCTGGGAAAAGTGTTTCCATCATCAACCCCACTACCAGAAAGACTCAATACAAAGTTCAAGCTTGTTCACAAGAGGAGGTTAATAAGGTCATGGACTTAGCAAAATCTGCACAAAAGTTATGGGCAAAGACCCCACTATGGAAACGTGCTGAGCTTCTTCACAAGGCAGCTGCTATCCTTAAAGAGCACAAAACTCCAATTGCAGAGTGCCTGGTGAAAGAAATAGCAAAGCCAGCCAAAGATGCTGTTATGGAGGTTGTAAGATCTGGGGATCTGGTTTCTTACACTGCTGAAGAAGGTGTAAGGATTCTGGGAGAGGGAAAGTTCTTGGTGTCGGATAGCTTTCCTGGAAATGAAAGGACAAAATATTGCCTCACATCCAAGATTCCACTAGGAGTGATTTTAGCCATTCCACCTTTTAACTATCCCGTCAATCTTGCTGTTTCCAAAATTGCTCCTGCCCTGATTGCTGGAAACTCAATTGTGCTCAAGCCTCCAACTCAGGGAGCTGTTTCTGCTTTGCACATGGTTCACTGCTTTCACTTGGCTGGTTTTCCCAAAGGCCTAATCAACTGTGTCACTGGAAAAGGCTCAGAAATTGGTGATTTCCTTACAATGCATCCAGGAGTGAACTGTATAAGCTTTACTGGTGGTGATACTGGCATTTCAATTTCAAAGAAGGCAGGCATGATTCCTCTGCAAATGGAGTTAGGAGGAAAAGATGCCTGCATTGTACTTGAGGATGCTGACCTGGATTTGGTTGCTGCAAACATTATAAAGGGAGGCTTTTCATACAGTGGTCAGAGGTGCACTGCTGTTAAGGTTGTCCTGGTAATGGAGTCCGTTGCCGATGCTTTGGTTGAGAAGGTGAAGGCTAAGGTGGCAAAACTAACTGTTGGACCACCAGAGGATGACTGTGATATCACCCCGGTTGTGTCAGAATCATCTGCCAATTTCATTGAAGGCCTGGTCTTGGATGCTAAGGAGAAAGGAGCAACATTCTGCCAGGAGTACAAAAGAGAAGGCAATCTTATTTGGCCTTTGCTACTGGACAATGTTAGGCCAGACATGAGAATCGCATGGGAAGAGCCATTTGGACCAGTTTTACCAGTAATTAGGATCAATTCAGTTGAAGAAGGAATCCATCATTGCAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAGGATGTCAACAAAGCAATAATGATCAGTGATGCAATGGAAACGGGAACAGTTCAGATAAATTCCGCCCCGGCTCGTGGGCCAGATCATTTTCCCTTTCAGGGTATAAAGGACAGTGGCATTGGATCTCAAGGGATTACCAACAGCATAAACATGATGACCAAGGTCAAAACGACTGTGATCAACTTACCCAGCCCTTCCTATACTATGGGCTAG

Predicted protein sequences of Glyma02g36370

Limit To All Plant Sequences

>Glyma02g36370.1   sequence type=predicted peptide   gene model=Glyma02g36370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAGTGLFAEILDGDAYKYYADGEWKKSASGKSVSIINPTTRKTQYKVQACSQEEVNKVMDLAKSAQKLWAKTPLWKRAELLHKAAAILKEHKTPIAECLVKEIAKPAKDAVMEVVRSGDLVSYTAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLINCVTGKGSEIGDFLTMHPGVNCISFTGGDTGISISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKAKVAKLTVGPPEDDCDITPVVSESSANFIEGLVLDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDVNKAIMISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPSPSYTMG*

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