SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G46790 | AT | Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:17231975-17233948 REVERSE LENGTH=657 | SoyBase | E_val: 8.00E-165 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0030422 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference | SoyBase | N/A | ISS |
| GO:0031425 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast RNA processing | SoyBase | N/A | ISS |
| GO:0031426 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polycistronic mRNA processing | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| PTHR24015 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PF01535 | PFAM | PPR repeat | JGI | ISS | |
| UniRef100_B9SWG6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Bipolar kinesin KRP-130, putative n=1 Tax=Ricinus communis RepID=B9SWG6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337202 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337202 related cluster n=1 Tax=unknown RepID=UPI0002337202 | SoyBase | E_val: 0 | ISS |
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Glyma02g36300 not represented in the dataset |
Glyma02g36300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g201800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g36300.1 sequence type=CDS gene model=Glyma02g36300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGCGGAGTCTTGTATTGATCTGTTGTTGAGATGCAGAAACGTTTTCCATATTAGACAAGTTCATGCCCATGTTGTAGCCAATGGAACTCTCCAAGACTTGGTTATTGCAAACAAGCTCCTTTACACCTATGCCCAACACAAGGCCATTGATGATGCATATTCCCTGTTTGATGGATTGACAATGAGAGACTCCAAAACTTGGAGTGTCATGGTTGGTGGGTTTGCCAAGGCTGGAGACCATGCAGGTTGCTATGCCACCTTCAGGGAGCTTCTGAGGTGTGGTGTAACGCCTGATAACTACACTTTGCCTTTTGTAATAAGAACTTGCAGAGACAGAACGGACCTTCAAATTGGTCGCGTGATCCACGACGTGGTTTTGAAACATGGGTTGCTTTCGGATCATTTTGTTTGTGCCTCCCTTGTGGACATGTATGCCAAGTGCATAGTGGTTGAGGATGCTCAGCGGTTGTTTGAGAGAATGCTCAGTAAGGACCTTGTGACTTGGACAGTGATGATTGGTGCTTATGCAGATTGCAATGCGTACGAGTCATTGGTCTTGTTTGATCGGATGAGGGAAGAAGGTGTTGTTCCGGACAAGGTTGCTATGGTGACTGTTGTCAATGCCTGTGCTAAACTGGGGGCTATGCACAGAGCTAGGTTTGCTAATGATTACATTGTGAGAAATGGTTTCTCGTTGGATGTGATATTGGGGACTGCAATGATTGATATGTATGCAAAGTGTGGGAGTGTTGAGTCTGCAAGAGAGGTTTTTGATAGAATGAAGGAAAAAAATGTTATTTCATGGAGTGCCATGATTGCTGCATATGGGTATCATGGGAGGGGGAAGGATGCCATTGATTTGTTTCATATGATGTTGAGCTGTGCAATATTGCCAAATAGGGTCACTTTTGTGTCCCTCTTATATGCATGTAGTCATGCAGGACTTATTGAAGAGGGGCTTCGGTTTTTCAATTCGATGTGGGAAGAACATGCCGTTAGACCTGATGTCAAACATTATACCTGTATGGTTGATCTTCTGGGCCGTGCTGGGAGGCTAGATGAGGCTTTAAGATTGATTGAGGCCATGACTGTTGAAAAAGATGAAAGGCTGTGGAGTGCTTTGCTTGGGGCATGTAGAATTCATAGCAAGATGGAGTTGGCAGAAAAGGCTGCTAATTCTCTACTTGAACTACAGCCGCAAAATCCGGGACACTATGTGCTACTATCTAATATTTATGCAAAAGCTGGTAAGTGGGAAAAGGTTGCAAAATTTAGGGATATGATGACCCAAAGAAAGCTGAAAAAAATTCCTGGATGGACATGGATTGAAGTGGATAATAAAACCTATCAGTTTAGTGTTGGAGACAGATCCCATCCTCAATCCAAGGAGATCTATGAGATGTTGATGAGTTTGATTAAGAAGTTGGAGATGGCTGGATATGTACCTGATACAGATTTTGTTTTGCAAGATGTTGAGGAGGAAGTTAAGCAAGAAATGTTGTACACACATAGTGAAAAGTTAGCTATTGCATTTGGCCTAATTGCTATCCCTGAGGGTGAACCCATTAGGATCTCCAAAAATTTGAGGGTCTGTGGTGACTGTCACACATTTAGTAAGATGGTTTCATCCATTATGAGAAGGTCCATAATCGTTAGGGATGCAAATCGCTTTCACCATTTTAATGATGGGACTTGTTCATGTGGGGACTATTGGTAG
>Glyma02g36300.1 sequence type=predicted peptide gene model=Glyma02g36300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGAESCIDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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