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Report for Sequence Feature Glyma02g36230

Feature Type:gene_model
Chromosome:Gm02
Start:41621411
stop:41629412
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36145AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15168571-15169373 FORWARD LENGTH=186 SoyBaseE_val: 1.00E-62ISS
GO:0000023GO-bp Annotation by Michelle Graham. GO Biological Process: maltose metabolic process SoyBaseN/AISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0019252GO-bp Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_C6T125UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T125_SOYBN SoyBaseE_val: 4.00E-133ISS
UniRef100_Q8VXY0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Arabidopsis thaliana RepID=Q8VXY0_ARATH SoyBaseE_val: 6.00E-60ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g36230 not represented in the dataset

Glyma02g36230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma10g08690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g201500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma02g36230.1   sequence type=CDS   gene model=Glyma02g36230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATGATGGCAAGTAGTAGTAGTACAATGCAGAGTGTGTACCCGAGGGTGAGTGGAGCGAATTTCCACGTTCCGCTATCTCCCCACTCTCTCGTTCCTGTTTACAGCAACAGCCACTCCTTTTCAAAACTTCGCAATTCAATTCATCTGGCGGCGGCGCCGTTACCCAAAGCTTCGGCGGGGAACGGTGGCCTCACCGACGACGGAGTGTCATTAGGCACGATGAAGCTGCCTTTGGACACCGACCTTCAGAGATTCGATTCCTTGCTCTTTCAGTGGGCAAACAGCCTTTGCCAGGGAGCCAATCTGCCCCTTCCTGTGCCTCTCAAGGTGGACAAAATACCTGGTGGAGCTAGATTGGGTTTTATCACCATTGGGGATGGGAAAACTGAAGTTCTTGTGTATATTGATTGCTTGGTTTTTCCACCAACTGAAAACTCTGCTCCAATTTTCCGTGCCATTAGAAATGGTCCCTTGAAGGATAAGGCACCACCAGGTGAGCCCAGAATTATGAGAAGCCTTCTTCAAGCTCTTCAGAAGTCAGTTGAAATCGCCAGATTGTGA

>Glyma02g36230.1   sequence type=predicted peptide   gene model=Glyma02g36230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVMMASSSSTMQSVYPRVSGANFHVPLSPHSLVPVYSNSHSFSKLRNSIHLAAAPLPKASAGNGGLTDDGVSLGTMKLPLDTDLQRFDSLLFQWANSLCQGANLPLPVPLKVDKIPGGARLGFITIGDGKTEVLVYIDCLVFPPTENSAPIFRAIRNGPLKDKAPPGEPRIMRSLLQALQKSVEIARL*







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