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Report for Sequence Feature Glyma02g36150

Feature Type:gene_model
Chromosome:Gm02
Start:41548532
stop:41550156
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g36150
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36100AT Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) | chr2:15159744-15160669 REVERSE LENGTH=206 SoyBaseE_val: 9.00E-72ISS
GO:0007043GO-bp Annotation by Michelle Graham. GO Biological Process: cell-cell junction assembly SoyBaseN/AISS
GO:0042545GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall modification SoyBaseN/AISS
GO:0048226GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Casparian strip SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
PTHR11615Panther NITRATE, FROMATE, IRON DEHYDROGENASE JGI ISS
PTHR11615:SF54Panther SUBFAMILY NOT NAMED JGI ISS
PF04535PFAM Domain of unknown function (DUF588) JGI ISS
UniRef100_C6T1K6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Casparian strip membrane protein 4 n=1 Tax=Glycine max RepID=CASP4_SOYBN SoyBaseE_val: 4.00E-104ISS
UniRef100_I1JGL5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGL5_SOYBN SoyBaseE_val: 1.00E-135ISS

Expression Patterns of Glyma02g36150
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g36150 not represented in the dataset
Glyma02g36150 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g36150
ParalogEvidenceComments
Glyma10g08740 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g36150 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g201000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g36150
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g36150
>Glyma02g36150.1   sequence type=CDS   gene model=Glyma02g36150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACCACCATTGATGTCCCAGAATCAAGCAATGTTGCTAAAGAAAAAGTAGTTTTAGCTGCACCCTCAAGGTCTGGAGGGTGGAAGAAAGGGGTAGCAATAATGGACTTTATTCTAAGGTTAGGTGCCATAGCAGCTGCTCTTGGTGCTGCTGCCACAATGGGAACCAGTGATCAAACACTCCCTTTCTTTACTCAGTTCTTTCAGTTTGAAGCAAGTTATGATAGCTTCACTACTTTTCAGTTTTTTGTTATTACAATGGCACTTGTGGCTGGCTATCTTGTGCTGTCACTACCTTTCTCTATAGTAGCCATCATACGCCCCCATGCAGTTGGACCAAGGCTTTTCCTCATCATCTTAGACACAGTGTTTCTGACTTTGGCCACTGCTAGTGGTGCTTCAGCTGCTGCCATCGTTTACTTGGCACACAACGGGAACCAAGACTCGAACTGGCTTGCCATATGCAACCAATTTGGAGATTTTTGCGCGCAAACCAGTGGAGCAGTGGTGTCATCGTTCGTTTCCGTGGTTATCTTTGTGTTGCTGATTGTTATGTCTGCTTTGGCCCTTAGAAGACATTAA
Predicted protein sequences of Glyma02g36150
>Glyma02g36150.1   sequence type=predicted peptide   gene model=Glyma02g36150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTTIDVPESSNVAKEKVVLAAPSRSGGWKKGVAIMDFILRLGAIAAALGAAATMGTSDQTLPFFTQFFQFEASYDSFTTFQFFVITMALVAGYLVLSLPFSIVAIIRPHAVGPRLFLIILDTVFLTLATASGASAAAIVYLAHNGNQDSNWLAICNQFGDFCAQTSGAVVSSFVSVVIFVLLIVMSALALRRH*






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