Glyma02g36090 - SoyBase

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Report for Sequence Feature Glyma02g36090

Feature Type:	gene_model
Chromosome:	Gm02
Start:	41470765
stop:	41473580
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g36090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06250	AT	Annotation by Michelle Graham. TAIR10: AP2/B3-like transcriptional factor family protein \| chr5:1892714-1894058 REVERSE LENGTH=282	SoyBase	E_val: 5.00E-65	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0010073	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem maintenance	SoyBase	N/A	ISS
GO:0010358	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf shaping	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02362	PFAM	B3 DNA binding domain	JGI		ISS
UniRef100_D9ZIL2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ABI3L domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZIL2_MALDO	SoyBase	E_val: 2.00E-71	ISS
UniRef100_I1JGL1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGL1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g36090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g36090

Paralog	Evidence	Comments
Glyma10g08871	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g36090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g200500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g36090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g36090

Limit To All Plant Sequences

>Glyma02g36090.1   sequence type=CDS   gene model=Glyma02g36090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGACAAACCACTACACCATGGACCTTCCCGAACCAACACTCTGGTGGCCACACCCACACCAACAACAACTAACCTTAATAGATCCAGACCCTCTCCCTCTGAACCTCAACAACGACGACAACGACAATGGCGACGACAACGACAACGACGAAAACCAAACAGTTACAACAACCACAACAGGAGGAGAAGAAGAAATAATAAACAATAAAGAACCGATGTTCGAGAAGCCGCTAACCCCGAGCGACGTGGGGAAGCTGAACCGCCTCGTAATCCCGAAGCAGCACGCTGAGAAGTACTTTCCACTGAGTGGTGGTGACTCGGGCAGTAGCGAGTGCAAGGGGCTGTTACTGAGTTTCGAGGACGAGTCGGGGAAGTGCTGGCGCTTCCGCTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAAGGGTGGAGCCGTTACGTGAAGGACAAGCGCCTCGATGCGGGAGATGTCGTTTTATTCCAGCGCCACCGCGCCGACGCGCAGCGCCTCTTCATCGGCTGGAGGCGCAGGCGGCAGAGCGACGCCCTGCCGCCGCCTGCGCACGTTAGCAGCAGGAAGAGTGGTGGTGATGGGAATAGTAGTAAGAATGAGGGTGATGTGGGCGTGGGCTGGACCAGAGGGTTCTATCCTGCGCATCATCCTTATCCTACGCATCATCATCATCCCTCGCCATACCATCACCAACAAGATGACTCTCTTCATGCAGTTAGAGGGTCCCAAGGTCAGAACCAAAGGACGAGACCAGTGGGAAACAGCAGTTCTAGTTCGAGTTCGAGTTCAAGGGTACTTAGGCTATTCGGGGTCAACATGGAATGCCAACCCGAACATGATGATTCTGGACCCTCCACACCCCAATGCTCCTACAATACTAACAACATATTGCCATCCACACAGGGCACAGATATTCATTCCCATCTCAATTTCTACCAACAACAACAAACTTCTAATTCCAAGCCTCCCCCTCATCACATGATGATACGTCACCAACCATACTACTACTAG

Predicted protein sequences of Glyma02g36090

Limit To All Plant Sequences

>Glyma02g36090.1   sequence type=predicted peptide   gene model=Glyma02g36090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTNHYTMDLPEPTLWWPHPHQQQLTLIDPDPLPLNLNNDDNDNGDDNDNDENQTVTTTTTGGEEEIINNKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGDSGSSECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRADAQRLFIGWRRRRQSDALPPPAHVSSRKSGGDGNSSKNEGDVGVGWTRGFYPAHHPYPTHHHHPSPYHHQQDDSLHAVRGSQGQNQRTRPVGNSSSSSSSSSRVLRLFGVNMECQPEHDDSGPSTPQCSYNTNNILPSTQGTDIHSHLNFYQQQQTSNSKPPPHHMMIRHQPYYY*

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