SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| KOG0107 | KOG | Alternative splicing factor SRp20/9G8 (RRM superfamily) | JGI | ISS | |
| PTHR24011 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24011:SF258 | Panther | JGI | ISS | ||
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF00098 | PFAM | Zinc knuckle | JGI | ISS | |
| UniRef100_B9SVZ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Splicing factor, arginine/serine-rich, putative n=1 Tax=Ricinus communis RepID=B9SVZ5_RICCO | SoyBase | E_val: 2.00E-115 | ISS |
| UniRef100_I1JGK7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JGK7_SOYBN | SoyBase | E_val: 9.00E-174 | ISS |
|
Glyma02g36027 not represented in the dataset |
Glyma02g36027 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g09065 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g200000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g36027.1 sequence type=CDS gene model=Glyma02g36027 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCACTTTATATTGGTAATCTGTCAGAACATTCTCAAAGAGATGATCTCGAGCGTGTTTTCCGTCGATTTGGGCATTGTAATGTTCAGCTGAAAAGAGATGGCTATGGCTTTGTAGTATTTGATTTCCCTCCCGATGCGGAAAAGGCTCTGAGAGCACTGAAAGGTAGAAATATATGTGGTGAACCGTTGACACTAACATGGTCCAATAAACAGCCTAGTACACATTTTTCTAGAATTCCTAGTGGTGGCAGAAGAAATGTGTATGAGTTACAACATGCGAGGAATCCTGAAAGAGTCGGGTATGTGAGAAGGAGATCTGGTTTCAGCGGGTGGTCGAATCAGAAGATGGGAAGGGGAAAATCTGTGGAAATGCCCAGTGAGGAGAGGGGATATCGTCATGATGATTTTAAAGATTATGTTGGGGAAGAAAAAAAATTTGGGGGAGACTTTCCCTATGAAGGCGGTGGAGTTGTTCCTAACAAGGAGGATGAGCCAGTTCATGACCCGTTAGTTGACAATGGGAATGGAAATGCTATAGAATTTGATCGTTATGAACCTTACCAGGGCAATGATAGGAAGCATGACAATGAAGATTATCATGTCGGTTACTCTGGTGGTTCTCCTGCAGCCCATTCCCTAGAGAATGTGAGCAGAGCCATTGGCGAGGATACCTCAAATCGTCCAAATGGGTCAAAATTCCAGCAAATTTGTTTTAGATGTGGTGATCCTGGTCATAAAATTCGAAATTGTCCAAAAGAACATACTTCACAGAGGAAATATAACAGGTTGGATGTTTGGCAGAATAATAGAATAGACAAGAAGCATAAAAGTGAAGATGTGAATAAATTTGAATCTGATTCCTTGGCAAAGCTGCAGTCAAATTTGGAGCCGTTGTCACTGAGGCACCAGAGAGATGGGAGGAGGTTGTCTGGTTCACGACATCACCATGCACCATGGAGAAATGAATCATTCCCGGGAGCAAGGGAAACTGATAGGCATAAAAAAAAGGAATATGTAGGAAAGAAACGAAGCAGAAATGACATAGAATTGCCTAAACAATCTAATGCAAAGATATCCAAGCGGTCAGTCTCATCCTCTTTGCTATCTGATTACTCTGCATCTCACTTTCTTTCAAATTCTCAGTCATCCAAGTCATTGCGTAGGTCTAGTTCCCATTCTAGATCAAGATCAGTGTCTTCTAGATCACATTCTTCATCATCAAAATCTCAGTATTGTAAAGGTAAAAGTTTGAATTCTAGGAGATCAAGCTCCCCTATGTCTCTGTGTCTATCACTCAATCAGACTTTATCATCATCTCCAAATAAAATACAGTTGAATTCAAAAGCCTCGTCCATTAATGGTACTGCTCTTGAATCTGTGGAGCATTTGGTTGCACAGGGACAACAAATTGGCAGTAAAATGGAATTGGATAATCTTCAATCCAAGGGTACAGGTGTTGCTGTAAATGGAAAAGCTGCAGTGTATACCACAGTGGTGGATGGTGTGGAAAAGGGCCAATTTGTACAGGAGGACAATCATGAAAATCATTTTATCTTAAAATCATCTGACAGAGTAACAGATTTAAACGAACCACTTGTTGGGAATTTATCTCCACCGATAGAAAAAGAGACAAAGGATATTGAGCATTCTGGAGCAATGATGTTGGATGATATTTCAACAGAAATTCAGAAGTCTGCTTCTGAAACTAATGTCAATCTCCATTCTAACCTTTCAACCATTGTATCCACAGAGGAGATTTGCATGGTTCTTAATACCTATGGCTTGGAACTTCCAAAAGACGATGAAAACAATTTAACAATTGATGCCTTATTTGGTTGTGCTCGGTTGTGGCCTTGGCATGTTGTTTATTACCGTAGGTTGAAGAAAGGCCCAATTTCAACTGAGAACTATGCCAGGCGGGTTGCTCAGAATCAGGAATTTGGCATTGTTGATAAGTATGTAAGAAGCAGTAGTGGATGGGGAGAGTTCAGTCTTGAGAATGCTTAA
>Glyma02g36027.1 sequence type=predicted peptide gene model=Glyma02g36027 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLYIGNLSEHSQRDDLERVFRRFGHCNVQLKRDGYGFVVFDFPPDAEKALRALKGRNICGEPLTLTWSNKQPSTHFSRIPSGGRRNVYELQHARNPERVGYVRRRSGFSGWSNQKMGRGKSVEMPSEERGYRHDDFKDYVGEEKKFGGDFPYEGGGVVPNKEDEPVHDPLVDNGNGNAIEFDRYEPYQGNDRKHDNEDYHVGYSGGSPAAHSLENVSRAIGEDTSNRPNGSKFQQICFRCGDPGHKIRNCPKEHTSQRKYNRLDVWQNNRIDKKHKSEDVNKFESDSLAKLQSNLEPLSLRHQRDGRRLSGSRHHHAPWRNESFPGARETDRHKKKEYVGKKRSRNDIELPKQSNAKISKRSVSSSLLSDYSASHFLSNSQSSKSLRRSSSHSRSRSVSSRSHSSSSKSQYCKGKSLNSRRSSSPMSLCLSLNQTLSSSPNKIQLNSKASSINGTALESVEHLVAQGQQIGSKMELDNLQSKGTGVAVNGKAAVYTTVVDGVEKGQFVQEDNHENHFILKSSDRVTDLNEPLVGNLSPPIEKETKDIEHSGAMMLDDISTEIQKSASETNVNLHSNLSTIVSTEEICMVLNTYGLELPKDDENNLTIDALFGCARLWPWHVVYYRRLKKGPISTENYARRVAQNQEFGIVDKYVRSSSGWGEFSLENA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
