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Report for Sequence Feature Glyma02g35980

Feature Type:gene_model
Chromosome:Gm02
Start:41361854
stop:41362684
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g35980
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G04820AT Annotation by Michelle Graham. TAIR10: ovate family protein 13 | chr5:1399685-1400467 FORWARD LENGTH=260 SoyBaseE_val: 4.00E-35ISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF04844PFAM Protein of unknown function, DUF623 JGI ISS
UniRef100_Q9FMC8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ovate family protein 13 n=1 Tax=Arabidopsis thaliana RepID=Q9FMC8_ARATH SoyBaseE_val: 2.00E-32ISS
UniRef100_UPI00023371FBUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023371FB related cluster n=1 Tax=unknown RepID=UPI00023371FB SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g35980
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g35980
ParalogEvidenceComments
Glyma10g09320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g35980 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g199500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g35980
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g35980
>Glyma02g35980.2   sequence type=CDS   gene model=Glyma02g35980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTTTTTTAATCTCTTGAAAAGCAGACATGTCAGATCCTGCTCCTCTCCTTCATCATGGGCCTGGCCATCCTGCCACCAACCCAAAACCCTCTCTTTCAGAGTCACCGCCACCAATACCAACAATAACAAAAACAACGATGATGATGACAACAACATGAGAGACATTAACTTAGCGTTAGTGTCACAAACTCCAGAATCGTTCTTCACCGAGTCACCAGACTCGGCGAGCTTCTCGACAACCTCGGAGTTGTCCCGTGGCGTGGACCCCATCGAGACGGTGATTCGCGGCCTGCGTTCGGATCGACTCTTCTTCGATCGGGACGATGCAAGCTTCATGTTAGAGGGCAAACCGACGACGACCAGCCACCTGGAGCCGTTCAAAAACAGCGTCGTTTTGACGATGGACTCGGAGGACCCTCACGTGGATTTCCGCAAGTCCATGGAGGAGATGGTGGAGACTCTCGGCGTCGAAGACTGGGAGAGTCTCGAGGACCTTCTGTGCTGGTACCTGCAGGCCAACGCCAAGAGCAACCATGAGTACATCATTGGCGCTTTCGTCGATTTGTTGTTCTATCTCGCTGTTCCAAATTCACCTTGCTCACAAGACTTTGAACATTCTCATTCTCGTCCTTCTTCTCCTTTATCGTTTTATAGTTCTTCTTCTTCTTCTTCTCCCTCATCTTCATGCAGCACTCGCTGTAATATAAAAGGTGAAGTGGAAGAGGAAGAGGAGGAGGTTGGTGCTTGTAGTTCTTCTTTTTCTTTAGCGCAGGGTAAGGAGGAGATTACACCTGAAGATGAAGTTGCTTCATCTTCTAACAACTGA
Predicted protein sequences of Glyma02g35980
>Glyma02g35980.2   sequence type=predicted peptide   gene model=Glyma02g35980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKFFNLLKSRHVRSCSSPSSWAWPSCHQPKTLSFRVTATNTNNNKNNDDDDNNMRDINLALVSQTPESFFTESPDSASFSTTSELSRGVDPIETVIRGLRSDRLFFDRDDASFMLEGKPTTTSHLEPFKNSVVLTMDSEDPHVDFRKSMEEMVETLGVEDWESLEDLLCWYLQANAKSNHEYIIGAFVDLLFYLAVPNSPCSQDFEHSHSRPSSPLSFYSSSSSSSPSSSCSTRCNIKGEVEEEEEEVGACSSSFSLAQGKEEITPEDEVASSSNN*






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