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Report for Sequence Feature Glyma02g35935

Feature Type:gene_model
Chromosome:Gm02
Start:41308862
stop:41315706
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g35935
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52525AT Annotation by Michelle Graham. TAIR10: ovate family protein 6 | chr3:19475159-19475638 FORWARD LENGTH=159 SoyBaseE_val: 2.00E-36ISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF04844PFAM Protein of unknown function, DUF623 JGI ISS
UniRef100_D7LU78UniRef Annotation by Michelle Graham. Most informative UniRef hit: ATOFP6/OFP6 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LU78_ARALL SoyBaseE_val: 3.00E-34ISS
UniRef100_I1JGK2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGK2_SOYBN SoyBaseE_val: 6.00E-118ISS

Expression Patterns of Glyma02g35935
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g35935 not represented in the dataset
Glyma02g35935 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g35935
ParalogEvidenceComments
Glyma10g09354 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g35935 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g199300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g35935
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g35935
>Glyma02g35935.1   sequence type=CDS   gene model=Glyma02g35935   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATCCAAGAATTGACCTGCGTTTTGGGGAGCCTTTGTTGAAACCCGAACATGAATCAACACGGACCCTCTTTGCCTCACATGCAAAAATAAATTGTGACCACCCTTCCTCTTTCTCACTGCTCAATCCCCATAAAAACCCTCTTTCCATTCCCACTTCCCACAAACTTTCTCACAACAGACATGACATTATTATTATTATTACTACATTAGCAGCAGCAATGTCTAGTTCCAGAAAAAAACTGGTTCTGAATACCGTGTCCGTGAGCCTGGGCTGCGGCAGCTGCAGAAGGCCCGGGCTCCTCCGGCACATATTCCACCCGAAGCGGAGGCCCAAGAAGCCCGCGTACCAGGCCCACGGGTTTCATTGGGACGACACCGCGACGAGCAGCAGCACCACCAACGCCTCCACCGCTGCCACGTTCTCGCCATGCTACGCGGAGGCCTCGGCGCAGTTCAGCAACTACGGGCGAGGCGTGGCGGTGGAGAAGGACTCTGATGATCCATACCTGGACTTCAGGCACTCTATGCTGCAGATGATACTGGAGAATGAGATATACTCTAAGGATGATCTCAGGGAGCTTCTCAACTGTTTTCTTCAGCTCAATTCGCCGGACCACCATGGTGTTATAGTGAGAGCGTTCACTGAGATCTGGAATGGAGTTTTCTCCGTGAGGAGGTCTGGTTCTTCCACTGGGTTCCACCTCAACCGAGTAACATTATCCTGGCATCAATCTAGTGGATGA
Predicted protein sequences of Glyma02g35935
>Glyma02g35935.1   sequence type=predicted peptide   gene model=Glyma02g35935   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNPRIDLRFGEPLLKPEHESTRTLFASHAKINCDHPSSFSLLNPHKNPLSIPTSHKLSHNRHDIIIIITTLAAAMSSSRKKLVLNTVSVSLGCGSCRRPGLLRHIFHPKRRPKKPAYQAHGFHWDDTATSSSTTNASTAATFSPCYAEASAQFSNYGRGVAVEKDSDDPYLDFRHSMLQMILENEIYSKDDLRELLNCFLQLNSPDHHGVIVRAFTEIWNGVFSVRRSGSSTGFHLNRVTLSWHQSSG*






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