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Report for Sequence Feature Glyma02g35892

Feature Type:gene_model
Chromosome:Gm02
Start:41166077
stop:41171373
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g35892
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36020AT Annotation by Michelle Graham. TAIR10: HVA22-like protein J | chr2:15123424-15125140 REVERSE LENGTH=258 SoyBaseE_val: 1.00E-64ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1726 KOG HVA22/DP1 gene product-related proteins JGI ISS
PTHR12300Panther HVA22-LIKE PROTEINS JGI ISS
PTHR12300:SF20Panther HVA22-LIKE PROTEIN JGI ISS
PF03134PFAM TB2/DP1, HVA22 family JGI ISS
UniRef100_G7ZUV8UniRef Annotation by Michelle Graham. Most informative UniRef hit: HVA22-like protein i n=2 Tax=Medicago truncatula RepID=G7ZUV8_MEDTR SoyBaseE_val: 3.00E-65ISS
UniRef100_I1L9I3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L9I3_SOYBN SoyBaseE_val: 7.00E-116ISS

Expression Patterns of Glyma02g35892
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g35892 not represented in the dataset
Glyma02g35892 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g35892 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g199000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g35892
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma02g35892
>Glyma02g35892.2   sequence type=transcript   gene model=Glyma02g35892   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTTTGTTACCTGTGACCTAAGGCTTCTTCCACATTTTGTTTGAGAGAAAGAGAGAATCAGAGGCCATTCTTCAAGAGGATTAAACCACATTACCTTCTAAAGAATAAAATCTCAACTTGTTAAATTTCCTTAGGAATTGGGTTTGGAGGCACCTCAATTCCAACACCATAAGGATTTAACTTTGCGTGCCTCTGAATCTCTCAAACGTGGGTCTCACAATTTAAGTTAGTTGCCGCCGTTTGTGTTAGTGGGAGTTGAAAATGCTGGGGGATTTCATTAATCGAATCCTTATACTCATTCTGGGGTATGCATACCCTGCCTTCGAATGCTATAAAACCCTGGAGAAAAATAAGGTCGATATTGAGGAACTTCTCTTCTGGTGTAAATATTGGATCATTATGGCACAATTCACTGTACTGGAAAAGTTTACAGATATATTTATTGGATGGCTGCCAATGTATGGATTGATGAAGCTGGTGCTCTTTGTCTACTTGTGGTATCCCAAAACTAAAGGGACAGGATATGTTTACGAGACTGTGTTGGGGCCTTACGTATCAAGGCTGATAAGTCATGAACATGACATTGACATGAAATTATTGGAGTTGAAGGCTACAGGATGGGATAATGTCATATATTACTGGCAATACTGCGCCAAATTTTGGCAAAGTGCTTTTGTCAAGGCTCTTCAGCACTTGGCTTCTCAATCAAGTGGATTTTCTGCCAACCCCAATACAGAGAATAAGGACGCGCAAGGTCAAAGTGTCCCACAAGCGCCTCCAAACCAGACCCAATCGTCCTTCATGAAGCAAAGCAGCACCCTAAGCAAAAGCAAGAAGTGGCCTCCAAGCCCCCCCAGTGAAAACCAAAACTCTCAAACCGAATATATGGATGAAGAAGAGGAAGAGCCATGGGAACCCAAATCCGTCACAATCAACGGCCAACACTAGCGCGTGAGCGTCAAGGACATTGAATCAACACCGCACGCGCAGACTCAGACGGTTAGACACACAACAACAAAACCCTCGAACCCCACTACATCGATGATTG
Coding sequences of Glyma02g35892
>Glyma02g35892.1   sequence type=CDS   gene model=Glyma02g35892   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGGGGATTTCATTAATCGAATCCTTATACTCATTCTGGGGTATGCATACCCTGCCTTCGAATGCTATAAAACCCTGGAGAAAAATAAGGTCGATATTGAGGAACTTCTCTTCTGGTGTAAATATTGGATCATTATGGCACAATTCACTGTACTGGAAAAGTTTACAGATATATTTATTGGATGGCTGCCAATGTATGGATTGATGAAGCTGGTGCTCTTTGTCTACTTGTGGTATCCCAAAACTAAAGGGACAGGATATGTTTACGAGACTGTGTTGGGGCCTTACGTATCAAGGCTGATAAGTCATGAACATGACATTGACATGAAATTATTGGAGTTGAAGGCTACAGGATGGGATAATGTCATATATTACTGGCAATACTGCGCCAAATTTTGGCAAAGTGCTTTTGTCAAGGCTCTTCAGCACTTGGCTTCTCAATCAAGTGGATTTTCTGCCAACCCCAATACAGAGAATAAGGACGCGCAAGGTCAAAGTGTCCCACAAGCGCCTCCAAACCAGACCCAATCGTCCTTCATGAAGCAAAGCAGCACCCTAAGCAAAAGCAAGAAGTGGCCTCCAAGCCCCCCCAGTGAAAACCAAAACTCTCAAACCGAATATATGGATGAAGAAGAGGAAGAGCCATGGGAACCCAAATCCGTCACAATCAACGGCCAACACTAG

>Glyma02g35892.2   sequence type=CDS   gene model=Glyma02g35892   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGGGGATTTCATTAATCGAATCCTTATACTCATTCTGGGGTATGCATACCCTGCCTTCGAATGCTATAAAACCCTGGAGAAAAATAAGGTCGATATTGAGGAACTTCTCTTCTGGTGTAAATATTGGATCATTATGGCACAATTCACTGTACTGGAAAAGTTTACAGATATATTTATTGGATGGCTGCCAATGTATGGATTGATGAAGCTGGTGCTCTTTGTCTACTTGTGGTATCCCAAAACTAAAGGGACAGGATATGTTTACGAGACTGTGTTGGGGCCTTACGTATCAAGGCTGATAAGTCATGAACATGACATTGACATGAAATTATTGGAGTTGAAGGCTACAGGATGGGATAATGTCATATATTACTGGCAATACTGCGCCAAATTTTGGCAAAGTGCTTTTGTCAAGGCTCTTCAGCACTTGGCTTCTCAATCAAGTGGATTTTCTGCCAACCCCAATACAGAGAATAAGGACGCGCAAGGTCAAAGTGTCCCACAAGCGCCTCCAAACCAGACCCAATCGTCCTTCATGAAGCAAAGCAGCACCCTAAGCAAAAGCAAGAAGTGGCCTCCAAGCCCCCCCAGTGAAAACCAAAACTCTCAAACCGAATATATGGATGAAGAAGAGGAAGAGCCATGGGAACCCAAATCCGTCACAATCAACGGCCAACACTAG
Predicted protein sequences of Glyma02g35892
>Glyma02g35892.1   sequence type=predicted peptide   gene model=Glyma02g35892   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGDFINRILILILGYAYPAFECYKTLEKNKVDIEELLFWCKYWIIMAQFTVLEKFTDIFIGWLPMYGLMKLVLFVYLWYPKTKGTGYVYETVLGPYVSRLISHEHDIDMKLLELKATGWDNVIYYWQYCAKFWQSAFVKALQHLASQSSGFSANPNTENKDAQGQSVPQAPPNQTQSSFMKQSSTLSKSKKWPPSPPSENQNSQTEYMDEEEEEPWEPKSVTINGQH*

>Glyma02g35892.2   sequence type=predicted peptide   gene model=Glyma02g35892   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGDFINRILILILGYAYPAFECYKTLEKNKVDIEELLFWCKYWIIMAQFTVLEKFTDIFIGWLPMYGLMKLVLFVYLWYPKTKGTGYVYETVLGPYVSRLISHEHDIDMKLLELKATGWDNVIYYWQYCAKFWQSAFVKALQHLASQSSGFSANPNTENKDAQGQSVPQAPPNQTQSSFMKQSSTLSKSKKWPPSPPSENQNSQTEYMDEEEEEPWEPKSVTINGQH*






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