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Report for Sequence Feature Glyma02g35730

Feature Type:gene_model
Chromosome:Gm02
Start:40942853
stop:40944906
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g35730
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G52500AT Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein | chr3:19465644-19467053 REVERSE LENGTH=469 SoyBaseE_val: 2.00E-164ISS
GO:0000271GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process SoyBaseN/AISS
GO:0006508GO-bp Annotation by Michelle Graham. GO Biological Process: proteolysis SoyBaseN/AISS
GO:0006546GO-bp Annotation by Michelle Graham. GO Biological Process: glycine catabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004190GO-mf Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity SoyBaseN/AISS
KOG1339 KOG Aspartyl protease JGI ISS
PTHR13683Panther ASPARTYL PROTEASES JGI ISS
PTHR13683:SF98Panther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED JGI ISS
PF00026PFAM Eukaryotic aspartyl protease JGI ISS
UniRef100_B9T7L5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Pepsin A, putative n=1 Tax=Ricinus communis RepID=B9T7L5_RICCO SoyBaseE_val: 1.00E-170ISS
UniRef100_I1JGJ5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGJ5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g35730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g35730
ParalogEvidenceComments
Glyma10g09490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g35730 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g198200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g35730
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g35730
>Glyma02g35730.1   sequence type=CDS   gene model=Glyma02g35730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTTGAGTTGTTTTTCTTTTCCCCCTTCCAAAATGCCTTCTTCTCACATTCTTTTCTCCCTCCTCTCTTTCCTCTCCATCATAATCACTACCTTCTCTTCATCCACACCCAACACCATCACTCTCCATCTCTCTCCCTTATTCACCAACCACCCCTCTTCAAGTTCACACCCATTCCACACCCTCAAACTCGCCGTCTCAACATCCATCACAAGAGCCCACCACCTTAAAAACCACAAACCAAACAAGTCACTCGAAACCCCAGTTCACCCCAAAACCTACGGAGGCTACTCAATAGACCTCGAATTCGGAACCCCGTCACAAACCTTCCCCTTTGTTCTCGACACCGGTAGCACCCTCGTCTGGCTCCCGTGCTCCTCTCACTACCTCTGCTCCAAATGCAACTCCTTCTCAAACACGCCAAAGTTCATCCCTAAAAACTCGTCTTCTTCAAAGTTCGTTGGCTGCACCAACCCTAAATGCGCCTGGGTCTTCGGCCCAGACGTTAAATCCCATTGCTGCAGGCAAGACAAAGCTGCTTTTAATAATTGTTCCCAAACATGCCCTGCCTACACCGTCCAGTACGGCCTCGGCTCCACCGCGGGTTTTCTCTTATCCGAAAATCTCAACTTTCCCACCAAAAAATACTCCGATTTTCTCCTCGGCTGCTCCGTCGTCTCCGTCTACCAGCCGGCCGGAATCGCGGGGTTCGGTCGGGGAGAAGAGTCGCTGCCGTCGCAGATGAACCTCACGAGATTCTCTTACTGCTTACTCTCTCACCAGTTCGACGATTCCGCAACAATAACCAGCAACCTCGTCTTGGAAACCGCTTCCTCACGCGACGGAAAAACCAACGGCGTCAGCTACACGCCGTTTCTGAAAAACCCTACCACGAAGAAAAACCCCGCGTTCGGCGCGTACTATTACATCACTCTTAAAAGGATCGTAGTAGGAGAAAAGCGCGTGAGGGTTCCGAGGAGGCTGTTGGAGCCCAACGTCGACGGCGATGGTGGGTTCATCGTTGACTCCGGGTCAACGTTCACGTTCATGGAGAGACCGATTTTCGATCTGGTGGCGCAGGAGTTTGCAAAGCAGGTGAGTTACACGCGCGCGAGGGAGGCTGAGAAGCAATTTGGGTTGAGTCCGTGTTTTGTGTTGGCGGGTGGTGCTGAAACGGCGTCGTTTCCCGAGCTGAGGTTTGAGTTCAGGGGTGGCGCGAAGATGAGGCTGCCGGTGGCGAATTATTTCTCGCTGGTGGGGAAAGGTGACGTGGCGTGCTTGACGATTGTGTCTGATGACGTGGCGGGTTCTGGTGGGACGGTGGGACCCGCTGTGATATTGGGGAATTATCAGCAGCAGAATTTTTATGTGGAGTATGACTTGGAGAACGAGAGGTTTGGGTTTCGGAGTCAGAGTTGCCAAACGAACGTTTAA
Predicted protein sequences of Glyma02g35730
>Glyma02g35730.1   sequence type=predicted peptide   gene model=Glyma02g35730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLSCFSFPPSKMPSSHILFSLLSFLSIIITTFSSSTPNTITLHLSPLFTNHPSSSSHPFHTLKLAVSTSITRAHHLKNHKPNKSLETPVHPKTYGGYSIDLEFGTPSQTFPFVLDTGSTLVWLPCSSHYLCSKCNSFSNTPKFIPKNSSSSKFVGCTNPKCAWVFGPDVKSHCCRQDKAAFNNCSQTCPAYTVQYGLGSTAGFLLSENLNFPTKKYSDFLLGCSVVSVYQPAGIAGFGRGEESLPSQMNLTRFSYCLLSHQFDDSATITSNLVLETASSRDGKTNGVSYTPFLKNPTTKKNPAFGAYYYITLKRIVVGEKRVRVPRRLLEPNVDGDGGFIVDSGSTFTFMERPIFDLVAQEFAKQVSYTRAREAEKQFGLSPCFVLAGGAETASFPELRFEFRGGAKMRLPVANYFSLVGKGDVACLTIVSDDVAGSGGTVGPAVILGNYQQQNFYVEYDLENERFGFRSQSCQTNV*






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