Report for Sequence Feature Glyma02g35660
Feature Type: gene_model
Chromosome: Gm02
Start: 40767314
stop: 40768541
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma02g35660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G11650 AT
Annotation by Michelle Graham. TAIR10: NDR1/HIN1-like 2 | chr3:3676264-3676986 REVERSE LENGTH=240
SoyBase E_val: 4.00E-67 ISS
GO:0051607 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response to virus
SoyBase N/A ISS
GO:0009506 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR19957 Panther
SYNTAXIN
JGI ISS
PTHR19957:SF11 Panther
SYNTAXIN-RELATED
JGI ISS
PF03168 PFAM
Late embryogenesis abundant protein
JGI ISS
UniRef100_Q75QH3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Hin1 like protein n=1 Tax=Capsicum chinense RepID=Q75QH3_CAPCH
SoyBase E_val: 4.00E-72 ISS
UniRef100_UPI0001B6393B UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0001B6393B related cluster n=1 Tax=unknown RepID=UPI0001B6393B
SoyBase E_val: 0 ISS
Expression Patterns of Glyma02g35660
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma02g35660
Paralog Evidence Comments
Glyma10g09640 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma02g35660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.02g197800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma02g35660
Coding sequences of Glyma02g35660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma02g35660.2 sequence type=CDS gene model=Glyma02g35660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTGGTTTCTTTTCTGTTTGAACTTCGTGGTCAACATCACCATCACGCATTCACGCATTCACGCTACACGCTCTCCCTCACTACATTAACTCACCACGTTCCACACTGTACTCAACAAACAAACTTCAAGTCAGTTCGCACAATGTCCCATCTAAACGGCGCGTACTACGGCCCCTCCGTTCCGCCGCCGAAATCCTACCACCGCCCCTCCCGCGGCGGCCGCGACGGCTGCTGCTGCGGCTGCCTGAGCTGCTTCTGCGGCTGCATCTTCGACTGCATCCTGGGCCTCATCTGCAAGATCCTCACCACAATCCTCATCATCGTAGCAATACTCGGCTTTCTCTTCTGGTTCATCGTGCGCCCCAACGTGCTCAAATTCCACGTTACCGACGCGTCCCTCACGCGCTTCGACTACACCACCAACAACACTCTCCACTACGACCTCGCCCTCAACGTCTCGATCCGCAACCCGAACCGCAGGGTCGGCGTCTACTACGACCACATCGAAGCGCACGCGCTGTACCAGGATGTTTTGTTCGGGAACCAGACATTAGGGCCGTTCTTCCAGCACCACAAGAACACCACCTTCGTGAATCCCCTTTTCAAGGGCCAGCGCGTGACGCCACTCGCCGGGAACCAGGTCGAGGTGTTTGACAAGGAGAAGGGTTCGGGTGTTTACACCATCGATTTGAAGCTCTTTATGGTGGTTCGGTTCAAGTTCTTGCTGTTCAAGAGTGCGAGCGTGAAGCCCAAGATTCGGTGTGCGTTGCACGTGCCGCTGAAATCGCGTAACGCAACAACAACTATCTCCCCCGATGCTGCGTTTCAACCCACAGAGTGCGGTTGGGATTACGGGAAAAAATGGTGGATCCATTAG
Predicted protein sequences of Glyma02g35660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma02g35660.2 sequence type=predicted peptide gene model=Glyma02g35660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
VVSFLFELRGQHHHHAFTHSRYTLSLTTLTHHVPHCTQQTNFKSVRTMSHLNGAYYGPSVPPPKSYHRPSRGGRDGCCCGCLSCFCGCIFDCILGLICKILTTILIIVAILGFLFWFIVRPNVLKFHVTDASLTRFDYTTNNTLHYDLALNVSIRNPNRRVGVYYDHIEAHALYQDVLFGNQTLGPFFQHHKNTTFVNPLFKGQRVTPLAGNQVEVFDKEKGSGVYTIDLKLFMVVRFKFLLFKSASVKPKIRCALHVPLKSRNATTTISPDAAFQPTECGWDYGKKWWIH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
