SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G49390 | AT | Annotation by Michelle Graham. TAIR10: CTC-interacting domain 10 | chr3:18314901-18317658 REVERSE LENGTH=353 | SoyBase | E_val: 1.00E-42 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| PTHR24011 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24011:SF187 | Panther | JGI | ISS | ||
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_G7J8X9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Polyadenylate-binding protein n=1 Tax=Medicago truncatula RepID=G7J8X9_MEDTR | SoyBase | E_val: 6.00E-43 | ISS |
| UniRef100_I1JGI8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JGI8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g35640 not represented in the dataset |
Glyma02g35640 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g35640.1 sequence type=CDS gene model=Glyma02g35640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAACGCGGCCGCATTCTAACTCCAGTTTTAAGTCGTTTAATCCAATTCAACCTTGAAAACACAGTCTATATACTATCTATAAAAGAGAATCCTCTGGAAATTCCTAAAATACCCCTGCCTAAGATTAGAGATGAGATTTTTCCTCTGCCTTCATCTCACCACTCTCCAATCTTCCATTCTCCCCTCTTTTCTCCAATTGCGCTGCACCGAATTTCTCGACCTTCACTTCGGCAGAAAAAAGAAGAAGGAAGAAGAGAAGAGAAAGCCATCTATATCTGCATAGAAGAATTGCATCTGGCACGTGTTACTGAAGAGCAGTTGGCGGCACTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGTGTTTGTGGGGACCCTAATTCTATTCTCCGGTTTGCCTTCATTGAGTTTACAGACGAAGAAGGTGCAAGGGCTGCTTTGAACCTGTCTGGAACCATGCTTGGATATTACCCGTTGAGAGTGCTACCTTCAAAAACTGCTATTGTCCCTGTTAATCCAACATTTTTGCCCAGGGTAATTCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGGAACCAAATATGGTTACCGCACCGCTTCGGTGATGTGCTAGAACCAACCACATGCATATGCCCATCACCGACAACATGTTTATTTTGCTTTCCATTTTTGTTTTGCTTTCATTTTCTGATTCACATTTACAATTTAATTTCTGTTGTTAGGGATTCAGGGACCAAAAAGCCT
>Glyma02g35640.1 sequence type=predicted peptide gene model=Glyma02g35640 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high KRGRILTPVLSRLIQFNLENTVYILSIKENPLEIPKIPLPKIRDEIFPLPSSHHSPIFHSPLFSPIALHRISRPSLRQKKEEGRREEKAIYICIEELHLARVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNLSGTMLGYYPLRVLPSKTAIVPVNPTFLPRVILKMKGRCVQEQFIAQILTRRNQIWLPHRFGDVLEPTTCICPSPTTCLFCFPFLFCFHFLIHIYNLISVVRDSGTKKP
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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