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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma02g35580

Feature Type:gene_model
Chromosome:Gm02
Start:40594704
stop:40596329
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g35580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G05960AT Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr1:1808478-1815060 REVERSE LENGTH=1003 SoyBaseE_val: 6.00E-15ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
UniRef100_G7IHU2UniRef Annotation by Michelle Graham. Most informative UniRef hit: EFR3-like protein n=1 Tax=Medicago truncatula RepID=G7IHU2_MEDTR SoyBaseE_val: 1.00E-18ISS
UniRef100_UPI000233B025UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B025 related cluster n=1 Tax=unknown RepID=UPI000233B025 SoyBaseE_val: 2.00E-20ISS

Expression Patterns of Glyma02g35580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g35580 not represented in the dataset
Glyma02g35580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g35580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma02g35580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g35580
>Glyma02g35580.1   sequence type=CDS   gene model=Glyma02g35580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGACACATGTTATTTTCCAATCAATTTCAATGCCTTTGACTACATGGGAAGTGCTTAGGCCATTTTATGTTTCTTCTTGCGTTTTGATTTCTTCTTTTCTTGCACAAAATGTGAAGCAACTGGCTTCAATTGCAATAATTGGTGCAATATCTGACCTCATTAAACATTTAAGGAAATGCCTGCAAAATTTATATGACCTCATTGATCAAAGTTCTCTTAGGCTGAGCAGTCACCAAGTGAGTCTTTTGCTTTCTTCAATTTGGGTTCAGGCCATATTTGTGGAAAATGGCCCTGCAAATTATGAGGCAATGGCACACACCTATAGCATTGCTTTATTATTTTCTCGTTCTAAGAAAAGCATTATTTTAAGACGATTTTCAGGTAAGAACCGTCTTAGAAGTGTATATTTTTCTAAGACGGTTTTTTATGAAACCGTCGTAGAAAATGAAGACTCTCTACAACGTTGGTTACAACAACGGTTAATAATCGACACCGAATGTGTCTTTTAA
Predicted protein sequences of Glyma02g35580
>Glyma02g35580.1   sequence type=predicted peptide   gene model=Glyma02g35580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLTHVIFQSISMPLTTWEVLRPFYVSSCVLISSFLAQNVKQLASIAIIGAISDLIKHLRKCLQNLYDLIDQSSLRLSSHQVSLLLSSIWVQAIFVENGPANYEAMAHTYSIALLFSRSKKSIILRRFSGKNRLRSVYFSKTVFYETVVENEDSLQRWLQQRLIIDTECVF*






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