Glyma02g35550 - SoyBase

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Report for Sequence Feature Glyma02g35550

Feature Type:	gene_model
Chromosome:	Gm02
Start:	40531182
stop:	40535483
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g35550

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G01820	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein \| chr2:357664-360681 REVERSE LENGTH=943	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0009555	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen development	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF467	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_C6FF76	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase n=1 Tax=Glycine max RepID=C6FF76_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337103	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337103 related cluster n=1 Tax=unknown RepID=UPI0002337103	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g35550

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g35550

Paralog	Evidence	Comments
Glyma10g09990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g35550 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g197000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g35550

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g35550

Limit To All Plant Sequences

>Glyma02g35550.2   sequence type=CDS   gene model=Glyma02g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGAAGAACCTTGTACTCTTCCTATGTTTGTGTTTCTTCACTCTCGTTGTTTCCGAAACGGACTCGAACGACGTGAAGATTCTGAACAGCTTCAAAAGAGGGTTGAATAACTCAGAGCTCTTACCATGGCCCGAAGAAGGAGGAGACCCGTGCGGGAGCCCTCCATGGAAATACATCTTCTGCAACGGCAACAGAGTCGCTCAGATTCAGACCAAGAACCTGGGCCTGGTGGGCCCACTCCCTCCAAACCTCAACGAACTCACCATGCTCGAGAATCTGGGTTTACAGAACAACAACCTTAACGGTCCTTTACCCTCCTTCAAGGGCTTAACCAATCTAAAATACATTTTTCTCGGTCACAACGACTTCGATTCGATCCCCGTAGATTTCTTCGAGGGATTGAAGAGTCTCGAGGTGTTGGCTTTGGATTACAACGAAAAACTAAATGCAAGTAATGGCGGGTGGAACTTCCCGGCAACGCTGGAGGATTCGGCGCAGCTGAGGAACTTGAGTTGCATGAGCTGTAATCTGGTGGGCCCCATTCCGGGGTTCTTTGGGGACATGGCGTCGCTGTCGGTGTTGCTGCTGTCGGGCAACAATTTAACCGGGGAGATTCCGGCGACGTTGAACGCCGTTCCGGCGTTGCAGGTTCTCTGGCTGAACAACCAGCGTGGAGAGGGACTCGGTGGGAAAATTGACGTCTTGGCGAGTATGGTTTCGTTGACGAGTTTGTTGCTTCGTGGGAACAGTTTTGAAGGGAGTGTACCTATGAACATTGGGGATTTGGTTTCTTTGAAGGATTTGGATCTTAATGGGAATGAGTTTGTTGGGTTGATTCCGAGTGGTTTGGGTGGAATGATATTGGATAAGTTGGATTTGAATAACAACCACTTCATGGGTCCGATCCCGGAATTTGCAGCGAGTAAAGTGAGTTATGAGAACAATGAATTTTGTGAGGCAAAGGCCGGGGTTATGTGTGCTTTTGAAGTGATGGTGTTGTTGGAGTTTCTTGGAGGGTTGGGGTATCCTTGGATTTTGGTTGATTCTTGGAGTGGAAATGACCCTTGTCACGGGCCATGGTTGGGGATAAGGTGCAATGGGGACGGAAAGGTGGACATGATTATTTTGGAAAAGTTTAATCTTAGTGGGACTTTGAGTCCTTCTGTTGCCAAGTTAGATTCTCTTGTTGAGATAAGGTTGGGAGGTAATGATATTAGTGGTACGATACCGAGTAATTGGACTAGTTTGAAATCTTTGACATTGTTGGATCTGAGTGGGAATAACATTTCGCGTCCCTTGCCGAGTTTTGGGAAAGGGTTGAAGCTTGTGATTGATGGGGATCCTCATGGAAGTGCCCCAGAAGGTTCTCTTTCTCTACCCGGGACTGGTTCGTCGTCTACAAAGGGTGAATCTCCTTCCACTGATAAGCATAATCCTAATCCATCTGAAGACTCTAGTCCCAATCCAAAGTCTAGTAGTTCTTTTGAGTCGAATAATTCTTCCAATGGGAAAAAAATAGTTCCAATTGTGGTTCCTATTGCAGGTGTTGCAGCTGCCGCTTTTGTGCTCATTCCGCTTTATGTGTATTGTTTCAGGAAGAAAAAGGGTGTCTCTGAGGGTCCAGGGTCATTGGTGATTCACCCTAGGGATGCTTCTGATCCGGACAACGTGCTGAAGATTGTTGTTGCTAACAACAGCAGTCGGAGTGTTTCCACGGTGACTGGAAGTGGGTCTGGGACTATGACTCGAAGTGGTGAGTCTCGTGTCATTGAAGCTGGGAACCTTGTGATATCGGTTCAGGTTCTTCGAAACGTGACCAAGAATTTTGCACGGGAGAACGAGGTTGGACGTGGTGGGTTTGGGGTCGTTTACAAGGGAGAACTGGAAGATGGGACTAAGATTGCGGTGAAACGAATGGAATCCGGTGTGATTACCAGCAAGGCTTTGGATGAATTTCAGTCTGAGATTGCAGTTCTATCTAAAGTCCGGCACCGGCATTTGGTTTCTCTTTTGGGTTATTCAGTTGAAGGTAAAGAAAGGATTCTAGTTTATGAGTATATGCCACAAGGGGCTCTCAGTATGCATCTCTTCCATTGGAAGAGCTTACAACTGGAGCCACTGTCTTGGAAGAGGAGGCTCAACATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATAGTCTGGCTCATCAGATCTTCATTCACAGAGATCTTAAGTCATCAAATATTTTACTTGGGGATGACTTTAGAGCAAAAGTCTCAGATTTTGGATTGGTAAAACTTGCTCCTGATGGCAAAAAATCTGTAGTGACCCGACTTGCTGGTACATTTGGATACTTGGCACCAGAATATGCAGTGACTGGAAAAGTCACTACCAAAGCAGATGTTTTCAGTTTTGGCGTTGTCCTAATGGAGCTGCTAACTGGATTAATGGCACTTGACGAGGATAGACCCGAGGAAACCCAATACTTGGCGTCGTGGTTCCGGCATATAAAATCAGACAAGGAGAAACTAATGGCTGCTATTGACCCGGCCCTCGACATAAAGGAAGAAATGTTCGATGTCGTCTCCATTGTTGCTGAGCTAGCTGGGCACTGCACTACCAGAGAACCAAACGAAAGGCCAGATATGAGTCATGCTGTGAATGTTCTTTCGCCACTTGTTCAAAAATGGAAACCATTAGATGATGACACTGAGGAGTATGCTGGCGTAGATTACAGTCTTCCCCTTAACCAAATGGTGAAGGAGTGGCAGGAGACAGAAGGAAAGGACCTGAGCTATGTGGACCTACAAGACAGTAAGAGTAGTATCCCTGAAAGGCCTACTGGGTTAGCCGAGTCTTTTACTTCCATTGATGGCCGATGA

Predicted protein sequences of Glyma02g35550

Limit To All Plant Sequences

>Glyma02g35550.2   sequence type=predicted peptide   gene model=Glyma02g35550   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMKNLVLFLCLCFFTLVVSETDSNDVKILNSFKRGLNNSELLPWPEEGGDPCGSPPWKYIFCNGNRVAQIQTKNLGLVGPLPPNLNELTMLENLGLQNNNLNGPLPSFKGLTNLKYIFLGHNDFDSIPVDFFEGLKSLEVLALDYNEKLNASNGGWNFPATLEDSAQLRNLSCMSCNLVGPIPGFFGDMASLSVLLLSGNNLTGEIPATLNAVPALQVLWLNNQRGEGLGGKIDVLASMVSLTSLLLRGNSFEGSVPMNIGDLVSLKDLDLNGNEFVGLIPSGLGGMILDKLDLNNNHFMGPIPEFAASKVSYENNEFCEAKAGVMCAFEVMVLLEFLGGLGYPWILVDSWSGNDPCHGPWLGIRCNGDGKVDMIILEKFNLSGTLSPSVAKLDSLVEIRLGGNDISGTIPSNWTSLKSLTLLDLSGNNISRPLPSFGKGLKLVIDGDPHGSAPEGSLSLPGTGSSSTKGESPSTDKHNPNPSEDSSPNPKSSSSFESNNSSNGKKIVPIVVPIAGVAAAAFVLIPLYVYCFRKKKGVSEGPGSLVIHPRDASDPDNVLKIVVANNSSRSVSTVTGSGSGTMTRSGESRVIEAGNLVISVQVLRNVTKNFARENEVGRGGFGVVYKGELEDGTKIAVKRMESGVITSKALDEFQSEIAVLSKVRHRHLVSLLGYSVEGKERILVYEYMPQGALSMHLFHWKSLQLEPLSWKRRLNIALDVARGMEYLHSLAHQIFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAPEYAVTGKVTTKADVFSFGVVLMELLTGLMALDEDRPEETQYLASWFRHIKSDKEKLMAAIDPALDIKEEMFDVVSIVAELAGHCTTREPNERPDMSHAVNVLSPLVQKWKPLDDDTEEYAGVDYSLPLNQMVKEWQETEGKDLSYVDLQDSKSSIPERPTGLAESFTSIDGR*

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