Glyma02g35500 - SoyBase

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Report for Sequence Feature Glyma02g35500

Feature Type:	gene_model
Chromosome:	Gm02
Start:	40431265
stop:	40433976
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g35500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06360	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S8e family protein \| chr5:1944835-1946512 FORWARD LENGTH=260	SoyBase	E_val: 3.00E-176	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0042254	GO-bp	Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis	SoyBase	N/A	ISS
GO:0051604	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein maturation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG3163	KOG	Uncharacterized conserved protein related to ribosomal protein S8E	JGI		ISS
PTHR12642	Panther	FAMILY NOT NAMED	JGI		ISS
PF01201	PFAM	Ribosomal protein S8e	JGI		ISS
UniRef100_B9T6N0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TGF-beta-inducible nuclear protein, putative n=1 Tax=Ricinus communis RepID=B9T6N0_RICCO	SoyBase	E_val: 1.00E-176	ISS
UniRef100_C6TJM4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJM4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g35500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g35500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g196900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g35500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma02g35500

Limit To All Plant Sequences

>Glyma02g35500.2   sequence type=transcript   gene model=Glyma02g35500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCGTAAATCTTCACCGTCGCAGCTTAGGGTTTATAAGCGACGCCTTCCCTACTGTTAAACAATTCTCTTTCTCTTTCTCTGTTCTGAAACCACTCTCGCGTCGTTACCATGCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTCGATCACTTCGAGCGTAAGCGCAAGAAAGAGGCACGTCAAGTTCACAAGCGCTCTGCAATTGCCCAGAAGGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGGCGCAGATGAAGAAGACTTTGGCTATGCATGAAGAATCATCGTCTAGGCGCAAGACTGATGATAATGTTCAGGATGGAGCTGTTCCTGCATATCTTCTTGATCGTGATAACACGACCAGAGCAAAGGTTCTTAGCAACACCATTAAGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGACCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAACCTCCAAAGTACGAGCGGTTCATTCGTCCGACAGGATTGCGGTTCACTAAAGCTCATGTCACTCACCCAGAACTTAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGGGTAAGATTATTTGTTCCTTGTGTTTTGCTTGTTACCATTGACTCAAATCTTAACTGAAATTGATGTGTTGGAATTTTGTTTGCCGGGAATGCAGGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATGCTGTTTTGCTTGTTTAAGGTCGCATCAGGGTTCCAACTTGATTTCAGAGGCAGTGGTCTGGTACCTCTCCTATGATTTTTTTTTGGGCACAGGTTCTAAAATTCTTGTTTGGATTGTCAATGCAATGATCTGATCTTGCACTTTGACATTTGAGATAACTATTGTACAAGAGTTAAGCCAAACAAATCTCATAAATTTATATAGTTCATTCGCAAGACACAGTATTTTGAGTAGCTTTATTTCTTTATGGTTGGGATATTATGTACTGGCGAATTTTAATGAGCCACCGGTTTCCAAAATGTACTGCGAAATTTTTTTATGGTTGGTACATTTCTTAAATAATGTGCCGAACTACTGATACAAACAAACTTTTGAACTCTTACCAAAATGAATTGATGTTTCACGATATTGATTAAAATTATCGTTTAATACATGGTAC

>Glyma02g35500.3   sequence type=transcript   gene model=Glyma02g35500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTGTTTTTTTCTTTGGTTCTTATGTTGTTGTTGTCGTGTGTCGTGTAATTGTAGCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTCGATCACTTCGAGCGTAAGCGCAAGAAAGAGGCACGTCAAGTTCACAAGCGCTCTGCAATTGCCCAGAAGGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGGCGCAGATGAAGAAGACTTTGGCTATGCATGAAGAATCATCGTCTAGGCGCAAGACTGATGATAATGTTCAGGATGGAGCTGTTCCTGCATATCTTCTTGATCGTGATAACACGACCAGAGCAAAGGTTCTTAGCAACACCATTAAGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGACCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAACCTCCAAAGTACGAGCGGTTCATTCGTCCGACAGGATTGCGGTTCACTAAAGCTCATGTCACTCACCCAGAACTTAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGGGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATGCTGTTTTGCTTGTTTAAGGTCGCATCAGGGTTCCAACTTGATTTCAGAGGCAGTGGTCTGGTACCTCTCCTATGATTTTTTTTTGGGCACAGGTTCTAAAATTCTTGTTTGGATTGTCAATGCAATGATCTGATCTTGCACTTTGACATTTGAGATAACTATTGTACAAGAGTTAAGCCAAACAAATCTCATAAATTTATATAGTTCATTCGCAAGACACAGTATTTTGAGTAGCTTTATTTCTTTATGGTTGGGATATTATGTACTGGCGAATTTTAATGAGCCACCGGTTTCCAAAATGTACTGCGAAATTTTTTTATGGTTGGTACATTTCTTAAATAATGTGCCGAACTACTGATACAAACAAACTTTTGAACTCTTACCAAAATGAATTGATGTTTCACGATATTGATTAAAATTATCGTTTAATACATGGTAC

Coding sequences of Glyma02g35500

Limit To All Plant Sequences

>Glyma02g35500.1   sequence type=CDS   gene model=Glyma02g35500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTCGATCACTTCGAGCGTAAGCGCAAGAAAGAGGCACGTCAAGTTCACAAGCGCTCTGCAATTGCCCAGAAGGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGGCGCAGATGAAGAAGACTTTGGCTATGCATGAAGAATCATCGTCTAGGCGCAAGACTGATGATAATGTTCAGGATGGAGCTGTTCCTGCATATCTTCTTGATCGTGATAACACGACCAGAGCAAAGGTTCTTAGCAACACCATTAAGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGACCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAACCTCCAAAGTACGAGCGGTTCATTCGTCCGACAGGATTGCGGTTCACTAAAGCTCATGTCACTCACCCAGAACTTAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGGGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATGCTGTTTTGCTTGTTTAA

>Glyma02g35500.2   sequence type=CDS   gene model=Glyma02g35500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCAAGGGGATTACATAGAACGCCACAGAAGAGACTATGGCTACCGTCTCGATCACTTCGAGCGTAAGCGCAAGAAAGAGGCACGTCAAGTTCACAAGCGCTCTGCAATTGCCCAGAAGGCTCTGGGTATTAAGGGCAAAATGATTGCCAAGAAAAATTATGCTGAAAAGGCGCAGATGAAGAAGACTTTGGCTATGCATGAAGAATCATCGTCTAGGCGCAAGACTGATGATAATGTTCAGGATGGAGCTGTTCCTGCATATCTTCTTGATCGTGATAACACGACCAGAGCAAAGGTTCTTAGCAACACCATTAAGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGACCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAACCTCCAAAGTACGAGCGGTTCATTCGTCCGACAGGATTGCGGTTCACTAAAGCTCATGTCACTCACCCAGAACTTAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGGGTAAGATTATTTGTTCCTTGTGTTTTGCTTGTTACCATTGA

>Glyma02g35500.3   sequence type=CDS   gene model=Glyma02g35500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTGCCAAGAAAAATTATGCTGAAAAGGCGCAGATGAAGAAGACTTTGGCTATGCATGAAGAATCATCGTCTAGGCGCAAGACTGATGATAATGTTCAGGATGGAGCTGTTCCTGCATATCTTCTTGATCGTGATAACACGACCAGAGCAAAGGTTCTTAGCAACACCATTAAGCAAAAGAGGAAGGAGAAGGCAGGGAAATGGGATGTTCCTCTACCTAAGGTACGTCCCGTGGCTGAAGATGAAATGTTCAAAGTGGTCCGAACTGGTAAAAGAAAGACCAAGCAATGGAAGAGGATGGTTACAAAAGCTACATTTGTTGGGCCTGGTTTTACCAGAAAACCTCCAAAGTACGAGCGGTTCATTCGTCCGACAGGATTGCGGTTCACTAAAGCTCATGTCACTCACCCAGAACTTAAATGCACATTCAATCTAGAATTAATTGGAGTGAAGAAAAACCCCAATGGCCCTATGTACACCTCTCTTGGTGTCATTACCAAGGGAACTATAATTGAGGTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGGGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATGCTGTTTTGCTTGTTTAA

Predicted protein sequences of Glyma02g35500

Limit To All Plant Sequences

>Glyma02g35500.1   sequence type=predicted peptide   gene model=Glyma02g35500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPQGDYIERHRRDYGYRLDHFERKRKKEARQVHKRSAIAQKALGIKGKMIAKKNYAEKAQMKKTLAMHEESSSRRKTDDNVQDGAVPAYLLDRDNTTRAKVLSNTIKQKRKEKAGKWDVPLPKVRPVAEDEMFKVVRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLELIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV*

>Glyma02g35500.2   sequence type=predicted peptide   gene model=Glyma02g35500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPQGDYIERHRRDYGYRLDHFERKRKKEARQVHKRSAIAQKALGIKGKMIAKKNYAEKAQMKKTLAMHEESSSRRKTDDNVQDGAVPAYLLDRDNTTRAKVLSNTIKQKRKEKAGKWDVPLPKVRPVAEDEMFKVVRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLELIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKIICSLCFACYH*

>Glyma02g35500.3   sequence type=predicted peptide   gene model=Glyma02g35500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIAKKNYAEKAQMKKTLAMHEESSSRRKTDDNVQDGAVPAYLLDRDNTTRAKVLSNTIKQKRKEKAGKWDVPLPKVRPVAEDEMFKVVRTGKRKTKQWKRMVTKATFVGPGFTRKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLELIGVKKNPNGPMYTSLGVITKGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCINAVLLV*

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