Glyma02g35296 - SoyBase

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Report for Sequence Feature Glyma02g35296

Feature Type:	gene_model
Chromosome:	Gm02
Start:	40034736
stop:	40035659
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g35296

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52440	AT	Annotation by Michelle Graham. TAIR10: Dof-type zinc finger DNA-binding family protein \| chr3:19435447-19436190 FORWARD LENGTH=247	SoyBase	E_val: 7.00E-46	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF02701	PFAM	Dof domain, zinc finger	JGI		ISS
UniRef100_Q0GLD6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dof16 n=1 Tax=Glycine max RepID=Q0GLD6_SOYBN	SoyBase	E_val: 4.00E-77	ISS
UniRef100_UPI00023370F9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023370F9 related cluster n=1 Tax=unknown RepID=UPI00023370F9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g35296

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g35296 not represented in the dataset	Glyma02g35296 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g35296

Paralog	Evidence	Comments
Glyma10g10142	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g35296 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g195700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g35296

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g35296

Limit To All Plant Sequences

>Glyma02g35296.1   sequence type=CDS   gene model=Glyma02g35296   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAGTGGGTGGAAGCCTGAGGTTGAGATGTCACCAAATTGCCCTAGGTGTGGTTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAGCTTAACTCAACCAAGGTACTTTTGCAAGGGGTGCAGAAGGTACTGGACCAAAGGAGGGTCTCTCCGCAATGTGCCTGTCGGAGGTGGCTGCAAGAAGAACAGAAGAGGTAACAAGACCTTGTTGAGACAATCCATTGATGGTTTCACTTTCAAAAACTCGTCGCCACCTTGTGGCTATGCCACAGATCACAATAATAACCCTTTAGGGCATTCTTATGATCCTAGAATAAGGGCTTCTTCAGCTTCTAGCTCCTCCTCAGTAGTGACTGATGGACCTAACATTGATCTTGCTCTAGTTTTTGCAAATTTCCTTAACCAAAAGCCCAATAGTTCTGAAGGTGGGGTTGAGAGTAGTACTAATCCAGATCAAGAGCAAACAGTTTTTGATCCTTCTCTAGAAAACAATTCAAGGCTATCAAACACAGATGTTGTTGGTCCAAGTACTTTGCCTGAAGAACTTGGTCTCACTGGGTGTTTGAATCTTCCTGAACAACAACCACACACACATTCTAGTGAGGCTAATAATAACAATAACCAAATGTGCTATGGTGAGTTCAACACTATGCAGACACTTCAAAAAGATGGAATTGAGCAATACAGTAGTCATGGTGGTGCTATGAATTTTGAGCTGCCACCATTGCCGGGTGAAGGGGAAGCCTCACATGATCATCACATGATGTGGTCGAATTCTGAGATGATGATAAATCATCATGCATTTCAAGTCACACAACCTCCACTACTTGGACTTGAAGTTCATGATGCAGACTTATTAATAGGTAATTGGAGCCCCTTTGATTCGCCAAAGGATACTTCTTTTTCCAGGCCTTGA

Predicted protein sequences of Glyma02g35296

Limit To All Plant Sequences

>Glyma02g35296.1   sequence type=predicted peptide   gene model=Glyma02g35296   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESGWKPEVEMSPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCKKNRRGNKTLLRQSIDGFTFKNSSPPCGYATDHNNNPLGHSYDPRIRASSASSSSSVVTDGPNIDLALVFANFLNQKPNSSEGGVESSTNPDQEQTVFDPSLENNSRLSNTDVVGPSTLPEELGLTGCLNLPEQQPHTHSSEANNNNNQMCYGEFNTMQTLQKDGIEQYSSHGGAMNFELPPLPGEGEASHDHHMMWSNSEMMINHHAFQVTQPPLLGLEVHDADLLIGNWSPFDSPKDTSFSRP*

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