Glyma02g35020 - SoyBase

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Report for Sequence Feature Glyma02g35020

Feature Type:	gene_model
Chromosome:	Gm02
Start:	39786368
stop:	39788544
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g35020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G25010	AT	Annotation by Michelle Graham. TAIR10: Aminotransferase-like, plant mobile domain family protein \| chr2:10631691-10633547 FORWARD LENGTH=509	SoyBase	E_val: 5.00E-36	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR11668	Panther	SERINE/THREONINE PROTEIN PHOSPHATASE	JGI		ISS
PTHR11668:SF94	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF10536	PFAM	Plant mobile domain	JGI		ISS
UniRef100_I1JGF8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGF8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q5XM22	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Resistance-like protein HAAS-2 (Fragment) n=1 Tax=Glycine max RepID=Q5XM22_SOYBN	SoyBase	E_val: 4.00E-55	ISS

Expression Patterns of Glyma02g35020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g35020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma02g35020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g35020

Limit To All Plant Sequences

>Glyma02g35020.1   sequence type=CDS   gene model=Glyma02g35020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAAACACGAGGTTTAGGTCGTGCTATAGGTAGACTTATAGGCAGAGATAGACATGATGACCATGATGCAGTTGATGTTCTCGAGAGGCATAGGCCTACTGTCTCAGCTCGTAGGCAACGGGTTCATCAGATGACTGCGGATGCACGTGATATGGCTGAGGATGTTGCTAACATGGCTGAGGATGTCCCTGATCTGGTTGAGGAGGCACCTGAGATGTGTGCGGACGTACAAGGTGCTAATGGTGCTGAGGGGTCACATGCTGATGATGTTGAGGGATTCCCTAGTGGGCCACGTGACCCGTTAGTGCTGACATCATTTACGGACCATGTTGCACACACTGAACGTCCTGATTTGAAGTTGGTGTCACATGGGAGGAAGGTGACATTGATTAGGAGGCCAGTGCCTGAGATTGAAGGACTGATTGGTGCCACAGGATTAAGTCCATTAATCGATTGTTCAGTTGTTACTGGCGATCCTGGACTGATATCCGCATTTGTGGAGAGGTGGCACAGCGAGACCAGCACCTTCCACCTTCCGGTAGGAGAGTTGACGATCACATTGGATGATGTGTCGTCACTCTTTCATTTGCCTATCACTGGCGCGTTGCACAGTTTTCATACTCTTTCTACAAAGGAGGCGAGATTTTTGCTGACAGAGTTACTTGAGGTGTGTGCCGAGGAGGCTAGAGCCGAGACAACACTGACACGTGGGGCATACATACGACTAGGATGGGTTCGAGACATTTATGAGATGAGATGTCAGACCCGGCGGTGGATTGTAGCAGCTCGTGCTTATCTGCTGCACCTGGTCGATTGCACTCTTTTTGCTAATAAGAGTGCAACATACGTGCATGTGGTTCACCTAGACGCTTTTCGTGACCTCGGTCAGAGTGGTGGTTATGCTTGGAGAGTTGTCGCGCTGGTTCATATGTATGACCAGTTAGATGAGGCTTCTAGGACCACCACACGACAGCTTGCGAGGTACCTGACTCTATTACAGTGTTGGATCTATGAGCACTTCCCTAGTGTGCACCAGTGCGTGACAGATGATACATACCAGGAGACGTCCCCACGTGCTTCATGGTGGTTGACGTCGAAGGCGCACATGAAGGGAATCACAGGAGCACCTTACAGGGCATGTTGTGATGCTTTGACCGTCACAGATGTGTCCTGGTTTCCGTACACTGAGCATCGGGGGGTTAAGGCCTTTGAGCTGATTTCATCATTCCATGGTCAGCTGAGATTGGGTCCTATGGTGGTCACAGCTCGACCGGAGAGGGTGGTACGACAGTTTGGTTACATCCAGAGCATCCCTCCGCCGCCTGTTAGTGCTCGATTGTCACATGATGATATAGATGACAAGTGGATGCATTTTGCGGAGCACGTACTACCTGCAGTTGAGCTTTGTCTAGTGCCTGGGCAGGTATCTGCAGATTACATGGAGTGGTTTTTCCGCATATCTCACCCATTCATGATACCAACCGAGGCAGGTGACCAGCCGAGAGATGCACTAGCCGCAGACCCTGAGGAGTACATACAGCTGCCCAGCTCCCAAGTTCCAGTGGCATTTGACCCCCCTCCACATGTGGATGATTACGACGAATATGAGGCGATTGCACAGAGGTTGGAGCGTGTGCTCAACCTTAGGATGGTCACTGCAGGCACAGAGTTATATGAGATTATGCAGGACTGTCTGACGATCACCAGAGGAAGAGTCAGTGCTGATGGAAGTGTCAGGGCTTGTCAGAGACGTCGCACGGAGCATTGA

Predicted protein sequences of Glyma02g35020

Limit To All Plant Sequences

>Glyma02g35020.1   sequence type=predicted peptide   gene model=Glyma02g35020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKTRGLGRAIGRLIGRDRHDDHDAVDVLERHRPTVSARRQRVHQMTADARDMAEDVANMAEDVPDLVEEAPEMCADVQGANGAEGSHADDVEGFPSGPRDPLVLTSFTDHVAHTERPDLKLVSHGRKVTLIRRPVPEIEGLIGATGLSPLIDCSVVTGDPGLISAFVERWHSETSTFHLPVGELTITLDDVSSLFHLPITGALHSFHTLSTKEARFLLTELLEVCAEEARAETTLTRGAYIRLGWVRDIYEMRCQTRRWIVAARAYLLHLVDCTLFANKSATYVHVVHLDAFRDLGQSGGYAWRVVALVHMYDQLDEASRTTTRQLARYLTLLQCWIYEHFPSVHQCVTDDTYQETSPRASWWLTSKAHMKGITGAPYRACCDALTVTDVSWFPYTEHRGVKAFELISSFHGQLRLGPMVVTARPERVVRQFGYIQSIPPPPVSARLSHDDIDDKWMHFAEHVLPAVELCLVPGQVSADYMEWFFRISHPFMIPTEAGDQPRDALAADPEEYIQLPSSQVPVAFDPPPHVDDYDEYEAIAQRLERVLNLRMVTAGTELYEIMQDCLTITRGRVSADGSVRACQRRRTEH*

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