SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G35880 | AT | Annotation by Michelle Graham. TAIR10: TPX2 (targeting protein for Xklp2) protein family | chr2:15063204-15065259 REVERSE LENGTH=432 | SoyBase | E_val: 4.00E-54 | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0052541 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall cellulose metabolic process | SoyBase | N/A | ISS |
| GO:0052546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall pectin metabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF06886 | PFAM | Targeting protein for Xklp2 (TPX2) | JGI | ISS | |
| UniRef100_F4JU98 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TPX2 (Targeting protein for Xklp2) protein family n=1 Tax=Arabidopsis thaliana RepID=F4JU98_ARATH | SoyBase | E_val: 1.00E-35 | ISS |
| UniRef100_I1JGF1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGF1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g34870 not represented in the dataset |
Glyma02g34870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g10530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g192600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g34870.2 sequence type=transcript gene model=Glyma02g34870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGGGAGTGGTAGAAGAGTCATTGTGGCAGTTCCTATCTATTCCACTTCATTGAAAGCTAGTCCCACTTGAGCTTTCTTTCCACAAATCTCTCTTTGCATATCTTCAATGAAAACCTGAGTGTCACCAACTCCATCTTTCAGTTTCATCTTTCACACATACACACTTAAAAAACCACTTCTTCTTCTAGTGCTTCTGATCCAAACCACCACCATACACAAAATTCATATTGAAACTGTGTTCTGTTTGTTTGTTTGTTACTCTACTAATCTTTAGAACAATTCAGTCTTTGGATTTGTTTGTGTCCTTTTTATCAATCAAGGCCACACTCAAAATCCCAAGTTTTATAAATCAAGCATAATGGAATCTGAAAATGGAGTTGCTATGGAGGACGAGAAACATGTCATTGGGGAAACAACCAAGGAGAACATAAACAAAGAAGCTGAAAACAGTTGTAATGCTGAAATTCAGACCAAGAATGAGGTATCTGAAACTGATGTAAAAGCTGAAGGGCCCAAATCTGCAGCAAGTAAAATCTCAAAACTTGCCAAGGGACATGTTGGCAAAGGTGGTGTTGCTTCAAAGAACAACAAATCTGCCACCAAAGACAAACCCAATTTGAAGTCCACAACTTCATATCAAACACACAGGCCAAACCTTTCCAAGAGCTTTTCTTTCCCAGCCAAATCAGCTGGTGGAGAGGGCGTGAAGAAAAGCACTAATGGCACTCTCGCGAAGACAGAAACTAAGCATGCTAATGGGGCTAAAGCTGAGGCTTCTATTCGCCGTTCAAGCAGGCTGACAAACTCCGAAGTTAACTCAAAGGAGGCAGAAACAAACACTGGAAATTCTAATCAGAGGACTTCTTTGACATCCATCACTAGCCTTAAAACCTCTGAGTCTGGAATATTTACAGTGAATGCGGTTACCAAGAGCCTTACATCTGAGGAATCTTTAAGTCATACTCCTTGTAGGAGGAGCAGTGGATCTGGATTTTCCTTCAGACTGGAAGAAAGAGCAGAAAAGAGGAAGGAGTTCTTCTCAAAGTTAGAAGAGAAAATTCAGGAAAAGGAAGCAGAGAAAACTAACCAGCAAGAGAAATCAAAGGAAAACCAGGAGGCTGAGATCAAGCAATTGAGGAAGACCATGACTTTCAAAGCCACTCCAATGCCAAGTTTCTACAAGGAACCTCCTCCAAAAGTTGAATTGAAGAAGATACCTATAACGCGCCCAAAATCTCCAAAGCTTGGAAGGCACAAAGGATCTGCTGTGAACAATTCAGAAGATAAATCTTCTTCTAGTCCACATGGAAAGCAACAACAGAATGATTCAACCAAGGCAAAGGCAAAGGGTAGTAATAAAGAAGTGATTCCAAAGAAACCAATCAGAAAATCTCAAGCCAAGCTGCAGTCTCAGGAAAGTGCAATCAGAAAAACTGAAAAGGATTCTGTGAAGCCTACTAAAGTCGACCAAGATGCAAAAGCTGGCACAGGAAACAATGAAGAATGCCATGATCCATCAGTTAACAATTCTGAATACCAAAATGACATGGAGCAAGAATCCAAAAATGATCATGATCAGAATGGTGCACTGGTCTTGAACTCATCCACACCCGAGATTGTATCATGAGGTTGCTGTTGGAGTGTAGATTCATATATAGCCGGAGAGTATTTATATAAACATAGGACTCCATGTTACGAGTTATTTCATTATTGTTGTGAATATAGAGGTTGCTTCATGTTCATTATAAATCTTGTATTGCATTTAAAGATAGGTTGCTTGTTGTTATATTGAAGTGTTTCTGTTTGTAACGAATATTTTGTTAATTCATTATTTACCAAACAATTCATGTGTTTTTCCCTCTAATTAAATAAACACTTGACTACAA
>Glyma02g34870.1 sequence type=CDS gene model=Glyma02g34870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATCTGAAAATGGAGTTGCTATGGAGGACGAGAAACATGTCATTGGGGAAACAACCAAGGAGAACATAAACAAAGAAGCTGAAAACAGTTGTAATGCTGAAATTCAGACCAAGAATGAGGTATCTGAAACTGATGTAAAAGCTGAAGGGCCCAAATCTGCAGCAAGTAAAATCTCAAAACTTGCCAAGGGACATGTTGGCAAAGGTGGTGTTGCTTCAAAGAACAACAAATCTGCCACCAAAGACAAACCCAATTTGAAGTCCACAACTTCATATCAAACACACAGGCCAAACCTTTCCAAGAGCTTTTCTTTCCCAGCCAAATCAGCTGGTGGAGAGGGCGTGAAGAAAAGCACTAATGGCACTCTCGCGAAGACAGAAACTAAGCATGCTAATGGGGCTAAAGCTGAGGCTTCTATTCGCCGTTCAAGCAGGCTGACAAACTCCGAAGTTAACTCAAAGGAGGCAGAAACAAACACTGGAAATTCTAATCAGAGGACTTCTTTGACATCCATCACTAGCCTTAAAACCTCTGAGTCTGGAATATTTACAGTGAATGCGGTTACCAAGAGCCTTACATCTGAGGAATCTTTACATGTTGATCAGATTTCAACCCCAGCAAAAATTGAAAAACCAAATAAAGAGGAAGATGATGCTCATTCTACAACTTCAAGTCATACTCCTTGTAGGAGGAGCAGTGGATCTGGATTTTCCTTCAGACTGGAAGAAAGAGCAGAAAAGAGGAAGGAGTTCTTCTCAAAGTTAGAAGAGAAAATTCAGGAAAAGGAAGCAGAGAAAACTAACCAGCAAGAGAAATCAAAGGAAAACCAGGAGGCTGAGATCAAGCAATTGAGGAAGACCATGACTTTCAAAGCCACTCCAATGCCAAGTTTCTACAAGGAACCTCCTCCAAAAGTTGAATTGAAGAAGATACCTATAACGCGCCCAAAATCTCCAAAGCTTGGAAGGCACAAAGGATCTGCTGTGAACAATTCAGAAGATAAATCTTCTTCTAGTCCACATGGAAAGCAACAACAGAATGATTCAACCAAGGCAAAGGCAAAGGGTAGTAATAAAGAAGTGATTCCAAAGAAACCAATCAGAAAATCTCAAGCCAAGCTGCAGTCTCAGGAAAGTGCAATCAGAAAAACTGAAAAGGATTCTGTGAAGCCTACTAAAGTCGACCAAGATGCAAAAGCTGGCACAGGAAACAATGAAGAATGCCATGATCCATCAGTTAACAATTCTGAATACCAAAATGACATGGAGCAAGAATCCAAAAATGATCATGATCAGAATGGTGCACTGGTCTTGAACTCATCCACACCCGAGATTGTATCATGA >Glyma02g34870.2 sequence type=CDS gene model=Glyma02g34870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATCTGAAAATGGAGTTGCTATGGAGGACGAGAAACATGTCATTGGGGAAACAACCAAGGAGAACATAAACAAAGAAGCTGAAAACAGTTGTAATGCTGAAATTCAGACCAAGAATGAGGTATCTGAAACTGATGTAAAAGCTGAAGGGCCCAAATCTGCAGCAAGTAAAATCTCAAAACTTGCCAAGGGACATGTTGGCAAAGGTGGTGTTGCTTCAAAGAACAACAAATCTGCCACCAAAGACAAACCCAATTTGAAGTCCACAACTTCATATCAAACACACAGGCCAAACCTTTCCAAGAGCTTTTCTTTCCCAGCCAAATCAGCTGGTGGAGAGGGCGTGAAGAAAAGCACTAATGGCACTCTCGCGAAGACAGAAACTAAGCATGCTAATGGGGCTAAAGCTGAGGCTTCTATTCGCCGTTCAAGCAGGCTGACAAACTCCGAAGTTAACTCAAAGGAGGCAGAAACAAACACTGGAAATTCTAATCAGAGGACTTCTTTGACATCCATCACTAGCCTTAAAACCTCTGAGTCTGGAATATTTACAGTGAATGCGGTTACCAAGAGCCTTACATCTGAGGAATCTTTAAGTCATACTCCTTGTAGGAGGAGCAGTGGATCTGGATTTTCCTTCAGACTGGAAGAAAGAGCAGAAAAGAGGAAGGAGTTCTTCTCAAAGTTAGAAGAGAAAATTCAGGAAAAGGAAGCAGAGAAAACTAACCAGCAAGAGAAATCAAAGGAAAACCAGGAGGCTGAGATCAAGCAATTGAGGAAGACCATGACTTTCAAAGCCACTCCAATGCCAAGTTTCTACAAGGAACCTCCTCCAAAAGTTGAATTGAAGAAGATACCTATAACGCGCCCAAAATCTCCAAAGCTTGGAAGGCACAAAGGATCTGCTGTGAACAATTCAGAAGATAAATCTTCTTCTAGTCCACATGGAAAGCAACAACAGAATGATTCAACCAAGGCAAAGGCAAAGGGTAGTAATAAAGAAGTGATTCCAAAGAAACCAATCAGAAAATCTCAAGCCAAGCTGCAGTCTCAGGAAAGTGCAATCAGAAAAACTGAAAAGGATTCTGTGAAGCCTACTAAAGTCGACCAAGATGCAAAAGCTGGCACAGGAAACAATGAAGAATGCCATGATCCATCAGTTAACAATTCTGAATACCAAAATGACATGGAGCAAGAATCCAAAAATGATCATGATCAGAATGGTGCACTGGTCTTGAACTCATCCACACCCGAGATTGTATCATGA
>Glyma02g34870.1 sequence type=predicted peptide gene model=Glyma02g34870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESENGVAMEDEKHVIGETTKENINKEAENSCNAEIQTKNEVSETDVKAEGPKSAASKISKLAKGHVGKGGVASKNNKSATKDKPNLKSTTSYQTHRPNLSKSFSFPAKSAGGEGVKKSTNGTLAKTETKHANGAKAEASIRRSSRLTNSEVNSKEAETNTGNSNQRTSLTSITSLKTSESGIFTVNAVTKSLTSEESLHVDQISTPAKIEKPNKEEDDAHSTTSSHTPCRRSSGSGFSFRLEERAEKRKEFFSKLEEKIQEKEAEKTNQQEKSKENQEAEIKQLRKTMTFKATPMPSFYKEPPPKVELKKIPITRPKSPKLGRHKGSAVNNSEDKSSSSPHGKQQQNDSTKAKAKGSNKEVIPKKPIRKSQAKLQSQESAIRKTEKDSVKPTKVDQDAKAGTGNNEECHDPSVNNSEYQNDMEQESKNDHDQNGALVLNSSTPEIVS* >Glyma02g34870.2 sequence type=predicted peptide gene model=Glyma02g34870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESENGVAMEDEKHVIGETTKENINKEAENSCNAEIQTKNEVSETDVKAEGPKSAASKISKLAKGHVGKGGVASKNNKSATKDKPNLKSTTSYQTHRPNLSKSFSFPAKSAGGEGVKKSTNGTLAKTETKHANGAKAEASIRRSSRLTNSEVNSKEAETNTGNSNQRTSLTSITSLKTSESGIFTVNAVTKSLTSEESLSHTPCRRSSGSGFSFRLEERAEKRKEFFSKLEEKIQEKEAEKTNQQEKSKENQEAEIKQLRKTMTFKATPMPSFYKEPPPKVELKKIPITRPKSPKLGRHKGSAVNNSEDKSSSSPHGKQQQNDSTKAKAKGSNKEVIPKKPIRKSQAKLQSQESAIRKTEKDSVKPTKVDQDAKAGTGNNEECHDPSVNNSEYQNDMEQESKNDHDQNGALVLNSSTPEIVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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