SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G26760 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:9403869-9405704 REVERSE LENGTH=430 | SoyBase | E_val: 1.00E-101 | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG4780 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR14732 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04181 | PFAM | Rtr1/RPAP2 family | JGI | ISS | |
| UniRef100_UPI000233735C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233735C related cluster n=1 Tax=unknown RepID=UPI000233735C | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000273FB09 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 n=1 Tax=Otolemur garnettii RepID=UPI000273FB09 | SoyBase | E_val: 9.00E-12 | ISS |
|
Glyma02g34860 not represented in the dataset |
Glyma02g34860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g10540 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g192500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g34860.1 sequence type=CDS gene model=Glyma02g34860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAAGGACAAGCCTGTTTCTGTCAAAGATGCCGTCTTCAAATTGCAAATGTCACTCCTTGAAGGCATTCAAAATGAAGACCAGCTGTTTGCTGCCGGGTCTTTGATGTCAAGGAGTGACTACGAAGACATTGTAACCGAACGATCCATCACAAACATGTGTGGTTATCCACTCTGCAGCAATGCTTTGCCATCCGATCGCCCGCGGAAGGGTAGATATAGGATTTCACTGAAGGAGCACAAGGTCTATGACCTACAAGAGACTTACATGTTTTGTTCTTCAAATTGTCTTGTTAGCAGCAAAACTTTTGCTGGGAGCTTGCAAGCTGAGAGATGCTCTGGTTTAGACCTGGAGAAACTAAACAATGTTCTTAGCTTGTTTGAGAATTTGAATCTGGAACCGGTGGAGACTTTGCAAAAGAATGGAGATTTAGGTTTGTCTGATTTGAAAATCCAGGAGAAAACAGAAAGAAGCAGTGGGGAGGTGTCTTTGGAGCAGTGGGCTGGACCTTCAAATGCAATTGAGGGATATGTACCAAAACCAAGAAACCGTGATTCTAAGGGTTTGCGGAAAAATGTTAAAAAAGGGTCCAAAACTGGTCATGGCAAGTCAATTAGTGACATAAATTTAATTAACAGTGAGATGGGCTTTGTGAGTACTATAATTATGCAAGATGAGTATAGTGTTTCAAAAGTACCGCCAGGTCAAATGGATGCAACTGCTAATCATCAAATTAAACCAACAGCTACAGTCAAGCAGCCAGAAAAGGTTGATGCTGAAGTGGTCAGGAAAGATGATGATAGCATTCAAGATTTGTCTTCATCTTTTAAGAGCAGTTTAATTTTAAGCACCTCAGAAAAAGAGGAGGAAGTAACTAAATCATGTGAAGCTGTGCTCAAATTCTCCCCCGGTTGTGCTATTCAAAAGAAAGATGTTCATTCAATCTCCATATCAGAAAGACAATGTGATGTGGAACAGAATGATTCTGCTAGGAAATCTGTACAAGTCAAAGGGAAAACGAGTAGAGTTATTGCTAATGATGATGCTTCCACTTCCAATTTAGATCCTGCCAATGTTGAAGAGAAATTCCAAGTGGAAAAAGCAGGTGGATCATTAAAGACTAAACCCAGATCTTCCCTTAAATCTGCTGGTGAAAAGAAATTTAGTCGCACTGTTACTTGGGCGGATGAGAAAATCAACAGCACTGGGAGTAAAGATCTTTGTGAGTTTAAAGAATTTGGAGATATTAAAAAAGAATCTGACTCAGTAGGAAATAATATAGATGTTGCCAATGATGAAGATATATTACGTCGTGCGTCAGCAGAAGCTTGTGCTATTGCATTGAGCTCAGCATCAGAAGCAGTTGCCTCTGGAGACTCGGATGTCAGTGATGCTGTTTCTGAAGCTGGAATCACTATATTGCCACCTCCACATGATGCTGCTGAGGAAGGTACTGTGGAGGATGCTGATATACTACAAAATGATTCAGTTACTCTGAAATGGCCAAGAAAGACTGGAATTTCTGAAGCTGATTTCTTTGAATCTGATGACTCATGGTTTGATGCTCCACCAGAGGGTTTCAGTTTGACTTTGTCACCTTTTGCAACTATGTGGAATACCCTCTTTTCATGGACAACATCATCTTCTTTGGCATATATATATGGGAGGGATGAAAGTTTTCATGAAGAATATCTATCAGTTAATGGCAGAGAATATCCTTGCAAAGTTGTCTTGGCAGATGGTCGCTCATCTGAAATAAAACAAACTTTAGCCAGTTGTCTTGCTCGAGCTTTACCTGCGCTTGTTGCTGTGCTCCGGCTGCCAATACCAGTATCTATCATGGAGCAAGGGATGGCATGCTTGCTGGAGACAATGTCATTTGTGGACGCACTTCCAGCTTTCAGAACAAAACAATGGCAAGTGGTTGCTCTTTTGTTCATTGATGCATTGTCCGTATGTAGATTACCTGCTCTTATCTCATACATGACGGATAGGAGGGCTTCATTTCATAGGGTTTTGAGTGGTTCTCAAATACGTATGGAAGAGTATGAGGTTTTGAAGGATCTTGTAGTACCACTGGGCCGAGCACCTCATATCTCTTCCCAAAGTGGGGCATGA
>Glyma02g34860.1 sequence type=predicted peptide gene model=Glyma02g34860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKDKPVSVKDAVFKLQMSLLEGIQNEDQLFAAGSLMSRSDYEDIVTERSITNMCGYPLCSNALPSDRPRKGRYRISLKEHKVYDLQETYMFCSSNCLVSSKTFAGSLQAERCSGLDLEKLNNVLSLFENLNLEPVETLQKNGDLGLSDLKIQEKTERSSGEVSLEQWAGPSNAIEGYVPKPRNRDSKGLRKNVKKGSKTGHGKSISDINLINSEMGFVSTIIMQDEYSVSKVPPGQMDATANHQIKPTATVKQPEKVDAEVVRKDDDSIQDLSSSFKSSLILSTSEKEEEVTKSCEAVLKFSPGCAIQKKDVHSISISERQCDVEQNDSARKSVQVKGKTSRVIANDDASTSNLDPANVEEKFQVEKAGGSLKTKPRSSLKSAGEKKFSRTVTWADEKINSTGSKDLCEFKEFGDIKKESDSVGNNIDVANDEDILRRASAEACAIALSSASEAVASGDSDVSDAVSEAGITILPPPHDAAEEGTVEDADILQNDSVTLKWPRKTGISEADFFESDDSWFDAPPEGFSLTLSPFATMWNTLFSWTTSSSLAYIYGRDESFHEEYLSVNGREYPCKVVLADGRSSEIKQTLASCLARALPALVAVLRLPIPVSIMEQGMACLLETMSFVDALPAFRTKQWQVVALLFIDALSVCRLPALISYMTDRRASFHRVLSGSQIRMEEYEVLKDLVVPLGRAPHISSQSGA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
