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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10160 | AT | Annotation by Michelle Graham. TAIR10: DHFS-FPGS homolog C | chr3:3139588-3143949 REVERSE LENGTH=625 | SoyBase | E_val: 0 | ISS |
| GO:0006730 | GO-bp | Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process | SoyBase | N/A | ISS |
| GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
| GO:0090351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seedling development | SoyBase | N/A | ISS |
| GO:0005759 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial matrix | SoyBase | N/A | ISS |
| GO:0004326 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tetrahydrofolylpolyglutamate synthase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016874 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ligase activity | SoyBase | N/A | ISS |
| KOG2525 | KOG | Folylpolyglutamate synthase | JGI | ISS | |
| PTHR11136 | Panther | FOLYLPOLYGLUTAMATE SYNTHASE-RELATED | JGI | ISS | |
| PF08245 | PFAM | Mur ligase middle domain | JGI | ISS | |
| UniRef100_I1JGE2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JGE2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LA52 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Folylpolyglutamate synthase n=1 Tax=Glycine max RepID=I1LA52_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma02g34760 not represented in the dataset |
Glyma02g34760 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma10g16410 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.02g191500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g34760.2 sequence type=transcript gene model=Glyma02g34760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAGCAAGCCACGCTTTCATTGGCGCGGGTGAAAAGAGAGGTCCAATCCTAAATGCGTGAACCTGATTTTGTATTACAAATTGAGAGAAGGTGGTGGAAGAGCTGATCGATTGCTGCTAGTGCTATGGCCAACCGATAGCATAACCATAATTTATCATTTCTATTCCATCCATAGCGTCTACCGCTAACAATTCAGATTATCATGGCTTCTCTTCTTCTCACTGGTTAATATATACTGATGATAACTACTAGCAATATTTACACTAAGTGTGGGATGGTAGGAGTATCACATTTCCCTTGGGGGCATATGAAATCCACCGTCAAGACAAAATGGGTTTATTCTTGTTTACCTGCATTTACAAGCATAAATAATTTCGCAGGGCAAAGATTTATATATAAGACGTCATCTGAAGTTCTTTTTGAAAGGGAAAGCAATGCTGTCACAGATGGACGATTGCAAAATTTCCCAGTGTCTTCATACGAAACTGCCATGGAAAAAATTTCCTCTCTTATTACTCGCCAAAGGCGTGGGGAAAAGCCACCGATTTCCAACAAATTAGAAATAATGTCATTGTATCTCAAGATATTGGGTTTGGATGAAGATATAAATAAGCTCAACATTATTCATGTGGCAGGCACAAAGGGGAAGGGTTCAACATGCATATTCTGTGAGGCAATATTAAGGGAGTGTGGCTTTCGCACAGGAGTTTTCACATCCCCTCACCTAATTGACGTGCGTGAACGATTTCGTATAGACGGGATTGACATATCTGAAGACAAGTTTTTACAGTATTTCTGGGATTGTTGGAACCGATTGGAGGAAAATACAACAGAGCAGCTTTCAATGCCACCACTATTTCTGTTTCTTACTATATTGGCCTTCAAAATATTTATCTCTGAACAGGTTGATGCTGCCATAATAGAAGTTGGTCTTGGAGGCAAAGAAGACTCAACTAATGTGATTAAAGAACCTACTGTTTGTGGCATTACTTCTCTAGGCATGGATCATACTGAGATATTAGGAGATACTCTTGGACAGATAGCTTCACACAAGGCAGGGATTTTTAAGGTTCCACTGGAAGTGACTGAACCTTTCGATTGTAAACAAATGAAGGGATTAGAGCTTGGTTTATCTGGTGATCACCAATTCTATAATGCTGCTCTTGCCGTCTCACTTTCTAGATGCTGGCTTCAGAGAACAGGGAACTGGGGAAAAAAATATCAAAAGGATTCTAATTTGCCAGATGAGTTTATTAGAGGACTTTCAACTGCCCATTTTTCTGGAAGGGCTCAGATTGTTTATGACTCTTCTCCAAATTCTGACTGCTCAGAAATCTTGTCTAAAAATTGTGGTGGAGAGTTGATATTTTATTTGGATGGAGCTCATAGTCCAGAGAGCATGGAGACTTGCGCAAAGTGGTTCTCTAATGCCGTAAAAAGATATGAAATTTCATCACATTCATCTTTTGAAGTAGAAAATGCAGAGGAATCTTTAGAAAATGGTCACTTCCTACATGAAAGCAAGACATTGGAGCAGCTGGAGAAATCTTTTAGGCGGATTCTTCTATTCAATTGCTTAGATGTGAGAAATCCCCATATTTTGCTTCCACGGCTGGTAAATACATGCGCTTCTTCAGGTATTTATTTCTCAAGAGCACTTTTTGTCCCAAATATGTCAAAGTATAGTAAGGTTACTTCTGGTGCATCAGTTATTTCTTCTGATCTCCATGGCATAGACCTATCATGGCAATTTAACCTCCAAAGAATCTGGGAGAAGATTACGCACGGGAAAGAAATGACCACTTTGCTTGAAAAGGATTTCAAGATAGATAACAAGGAGATCTTACCACCTCATGAATTTCTTTACGATGATGCTTCAAGTGGCTGCCATTCTCATAACTATCTGGCACGCAGTGCAGTAATTCCTTCATTGCCATTGACAATAAAATGGCTGCGGGACTGTGTTAGAGACCATCCTTCCACAAGACTTCAGGTTCTTGTCACTGGATCACTGCATCTTGTTGGAGATGTACTAAAGCTCTTGAAAAGATGATTTAAATTGAAGAATATAAGTGCCTACCTTGGCTCTGGAAACTTTTATTGCACCAAAGAATTGCCATTCTTTCAATCATTTAAGCAGATACTGAGCTCATGTAATTGCTCAATGGTGTGACAATATTTCATTCTTTACAAATATGAGCAATTTTATGTGCATACTACTTTTCAGTTTTCACATCATATCCTAAATGCTGAAAAACGTGGGGGAAAAGAATAGGCAAAATTAGTAAACCAAATTAACCAATATTAAAAGGCTTTCATTGTTAATCTCGAGAAAGTTTAGTCCCAGGACAACACGGGAT
>Glyma02g34760.1 sequence type=CDS gene model=Glyma02g34760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAACTACTAGCAATATTTACACTAAGTGTGGGATGGTAGGAGTATCACATTTCCCTTGGGGGCATATGAAATCCACCGTCAAGACAAAATGGGTTTATTCTTGTTTACCTGCATTTACAAGCATAAATAATTTCGCAGGGCAAAGATTTATATATAAGACGTCATCTGAAGTTCTTTTTGAAAGGGAAAGCAATGCTGTCACAGATGGACGATTGCAAAATTTCCCAGTGTCTTCATACGAAACTGCCATGGAAAAAATTTCCTCTCTTATTACTCGCCAAAGGCGTGGGGAAAAGCCACCGATTTCCAACAAATTAGAAATAATGTCATTGTATCTCAAGATATTGGGTTTGGATGAAGATATAAATAAGCTCAACATTATTCATGTGGCAGGCACAAAGGGGAAGGGTTCAACATGCATATTCTGTGAGGCAATATTAAGGGAGTGTGGCTTTCGCACAGGAGTTTTCACATCCCCTCACCTAATTGACGTGCGTGAACGATTTCGTATAGACGGGATTGACATATCTGAAGACAAGTTTTTACAGTATTTCTGGGATTGTTGGAACCGATTGGAGGAAAATACAACAGAGCAGCTTTCAATGCCACCACTATTTCTGTTTCTTACTATATTGGCCTTCAAAATATTTATCTCTGAACAGGTTGATGCTGCCATAATAGAAGTTGGTCTTGGAGGCAAAGAAGACTCAACTAATGTGATTAAAGAACCTACTGTTTGTGGCATTACTTCTCTAGGCATGGATCATACTGAGATATTAGGAGATACTCTTGGACAGATAGCTTCACACAAGGCAGGGATTTTTAAGCCTAAGGTACCTGCCTTCACAGTACCCCAACCTCCTGAAGCAATGGATGTTATCCTTGAGAGGGCCAAAGAACTAATGGTTCCACTGGAAGTGACTGAACCTTTCGATTGTAAACAAATGAAGGGATTAGAGCTTGGTTTATCTGGTGATCACCAATTCTATAATGCTGCTCTTGCCGTCTCACTTTCTAGATGCTGGCTTCAGAGAACAGGGAACTGGGGAAAAAAATATCAAAAGGATTCTAATTTGCCAGATGAGTTTATTAGAGGACTTTCAACTGCCCATTTTTCTGGAAGGGCTCAGATTGTTTATGACTCTTCTCCAAATTCTGACTGCTCAGAAATCTTGTCTAAAAATTGTGGTGGAGAGTTGATATTTTATTTGGATGGAGCTCATAGTCCAGAGAGCATGGAGACTTGCGCAAAGTGGTTCTCTAATGCCGTAAAAAGATATGAAATTTCATCACATTCATCTTTTGAAGTAGAAAATGCAGAGGAATCTTTAGAAAATGGTCACTTCCTACATGAAAGCAAGACATTGGAGCAGCTGGAGAAATCTTTTAGGCGGATTCTTCTATTCAATTGCTTAGATGTGAGAAATCCCCATATTTTGCTTCCACGGCTGGTAAATACATGCGCTTCTTCAGGTATTTATTTCTCAAGAGCACTTTTTGTCCCAAATATGTCAAAGTATAGTAAGGTTACTTCTGGTGCATCAGTTATTTCTTCTGATCTCCATGGCATAGACCTATCATGGCAATTTAACCTCCAAAGAATCTGGGAGAAGATTACGCACGGGAAAGAAATGACCACTTTGCTTGAAAAGGATTTCAAGATAGATAACAAGGAGATCTTACCACCTCATGAATTTCTTTACGATGATGCTTCAAGTGGCTGCCATTCTCATAACTATCTGGCACGCAGTGCAGTAATTCCTTCATTGCCATTGACAATAAAATGGCTGCGGGACTGTGTTAGAGACCATCCTTCCACAAGACTTCAGGTTCTTGTCACTGGATCACTGCATCTTGTTGGAGATGTACTAAAGCTCTTGAAAAGATGA >Glyma02g34760.2 sequence type=CDS gene model=Glyma02g34760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAACTACTAGCAATATTTACACTAAGTGTGGGATGGTAGGAGTATCACATTTCCCTTGGGGGCATATGAAATCCACCGTCAAGACAAAATGGGTTTATTCTTGTTTACCTGCATTTACAAGCATAAATAATTTCGCAGGGCAAAGATTTATATATAAGACGTCATCTGAAGTTCTTTTTGAAAGGGAAAGCAATGCTGTCACAGATGGACGATTGCAAAATTTCCCAGTGTCTTCATACGAAACTGCCATGGAAAAAATTTCCTCTCTTATTACTCGCCAAAGGCGTGGGGAAAAGCCACCGATTTCCAACAAATTAGAAATAATGTCATTGTATCTCAAGATATTGGGTTTGGATGAAGATATAAATAAGCTCAACATTATTCATGTGGCAGGCACAAAGGGGAAGGGTTCAACATGCATATTCTGTGAGGCAATATTAAGGGAGTGTGGCTTTCGCACAGGAGTTTTCACATCCCCTCACCTAATTGACGTGCGTGAACGATTTCGTATAGACGGGATTGACATATCTGAAGACAAGTTTTTACAGTATTTCTGGGATTGTTGGAACCGATTGGAGGAAAATACAACAGAGCAGCTTTCAATGCCACCACTATTTCTGTTTCTTACTATATTGGCCTTCAAAATATTTATCTCTGAACAGGTTGATGCTGCCATAATAGAAGTTGGTCTTGGAGGCAAAGAAGACTCAACTAATGTGATTAAAGAACCTACTGTTTGTGGCATTACTTCTCTAGGCATGGATCATACTGAGATATTAGGAGATACTCTTGGACAGATAGCTTCACACAAGGCAGGGATTTTTAAGGTTCCACTGGAAGTGACTGAACCTTTCGATTGTAAACAAATGAAGGGATTAGAGCTTGGTTTATCTGGTGATCACCAATTCTATAATGCTGCTCTTGCCGTCTCACTTTCTAGATGCTGGCTTCAGAGAACAGGGAACTGGGGAAAAAAATATCAAAAGGATTCTAATTTGCCAGATGAGTTTATTAGAGGACTTTCAACTGCCCATTTTTCTGGAAGGGCTCAGATTGTTTATGACTCTTCTCCAAATTCTGACTGCTCAGAAATCTTGTCTAAAAATTGTGGTGGAGAGTTGATATTTTATTTGGATGGAGCTCATAGTCCAGAGAGCATGGAGACTTGCGCAAAGTGGTTCTCTAATGCCGTAAAAAGATATGAAATTTCATCACATTCATCTTTTGAAGTAGAAAATGCAGAGGAATCTTTAGAAAATGGTCACTTCCTACATGAAAGCAAGACATTGGAGCAGCTGGAGAAATCTTTTAGGCGGATTCTTCTATTCAATTGCTTAGATGTGAGAAATCCCCATATTTTGCTTCCACGGCTGGTAAATACATGCGCTTCTTCAGGTATTTATTTCTCAAGAGCACTTTTTGTCCCAAATATGTCAAAGTATAGTAAGGTTACTTCTGGTGCATCAGTTATTTCTTCTGATCTCCATGGCATAGACCTATCATGGCAATTTAACCTCCAAAGAATCTGGGAGAAGATTACGCACGGGAAAGAAATGACCACTTTGCTTGAAAAGGATTTCAAGATAGATAACAAGGAGATCTTACCACCTCATGAATTTCTTTACGATGATGCTTCAAGTGGCTGCCATTCTCATAACTATCTGGCACGCAGTGCAGTAATTCCTTCATTGCCATTGACAATAAAATGGCTGCGGGACTGTGTTAGAGACCATCCTTCCACAAGACTTCAGGTTCTTGTCACTGGATCACTGCATCTTGTTGGAGATGTACTAAAGCTCTTGAAAAGATGA
>Glyma02g34760.1 sequence type=predicted peptide gene model=Glyma02g34760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MITTSNIYTKCGMVGVSHFPWGHMKSTVKTKWVYSCLPAFTSINNFAGQRFIYKTSSEVLFERESNAVTDGRLQNFPVSSYETAMEKISSLITRQRRGEKPPISNKLEIMSLYLKILGLDEDINKLNIIHVAGTKGKGSTCIFCEAILRECGFRTGVFTSPHLIDVRERFRIDGIDISEDKFLQYFWDCWNRLEENTTEQLSMPPLFLFLTILAFKIFISEQVDAAIIEVGLGGKEDSTNVIKEPTVCGITSLGMDHTEILGDTLGQIASHKAGIFKPKVPAFTVPQPPEAMDVILERAKELMVPLEVTEPFDCKQMKGLELGLSGDHQFYNAALAVSLSRCWLQRTGNWGKKYQKDSNLPDEFIRGLSTAHFSGRAQIVYDSSPNSDCSEILSKNCGGELIFYLDGAHSPESMETCAKWFSNAVKRYEISSHSSFEVENAEESLENGHFLHESKTLEQLEKSFRRILLFNCLDVRNPHILLPRLVNTCASSGIYFSRALFVPNMSKYSKVTSGASVISSDLHGIDLSWQFNLQRIWEKITHGKEMTTLLEKDFKIDNKEILPPHEFLYDDASSGCHSHNYLARSAVIPSLPLTIKWLRDCVRDHPSTRLQVLVTGSLHLVGDVLKLLKR* >Glyma02g34760.2 sequence type=predicted peptide gene model=Glyma02g34760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MITTSNIYTKCGMVGVSHFPWGHMKSTVKTKWVYSCLPAFTSINNFAGQRFIYKTSSEVLFERESNAVTDGRLQNFPVSSYETAMEKISSLITRQRRGEKPPISNKLEIMSLYLKILGLDEDINKLNIIHVAGTKGKGSTCIFCEAILRECGFRTGVFTSPHLIDVRERFRIDGIDISEDKFLQYFWDCWNRLEENTTEQLSMPPLFLFLTILAFKIFISEQVDAAIIEVGLGGKEDSTNVIKEPTVCGITSLGMDHTEILGDTLGQIASHKAGIFKVPLEVTEPFDCKQMKGLELGLSGDHQFYNAALAVSLSRCWLQRTGNWGKKYQKDSNLPDEFIRGLSTAHFSGRAQIVYDSSPNSDCSEILSKNCGGELIFYLDGAHSPESMETCAKWFSNAVKRYEISSHSSFEVENAEESLENGHFLHESKTLEQLEKSFRRILLFNCLDVRNPHILLPRLVNTCASSGIYFSRALFVPNMSKYSKVTSGASVISSDLHGIDLSWQFNLQRIWEKITHGKEMTTLLEKDFKIDNKEILPPHEFLYDDASSGCHSHNYLARSAVIPSLPLTIKWLRDCVRDHPSTRLQVLVTGSLHLVGDVLKLLKR*
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