SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26420 | AT | Annotation by Michelle Graham. TAIR10: 1-phosphatidylinositol-4-phosphate 5-kinase 3 | chr2:11239434-11242239 REVERSE LENGTH=705 | SoyBase | E_val: 9.00E-24 | ISS |
| GO:0046488 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol metabolic process | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0048768 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell tip growth | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016324 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apical plasma membrane | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016307 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol phosphate kinase activity | SoyBase | N/A | ISS |
| GO:0016308 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 1-phosphatidylinositol-4-phosphate 5-kinase activity | SoyBase | N/A | ISS |
| PTHR23086 | Panther | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | JGI | ISS | |
| PTHR23086:SF6 | Panther | PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE | JGI | ISS | |
| PF01504 | PFAM | Phosphatidylinositol-4-phosphate 5-Kinase | JGI | ISS | |
| UniRef100_B9RJA3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phosphatidylinositol-4-phosphate 5-kinase, putative n=1 Tax=Ricinus communis RepID=B9RJA3_RICCO | SoyBase | E_val: 4.00E-23 | ISS |
| UniRef100_UPI0002336FFE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336FFE related cluster n=1 Tax=unknown RepID=UPI0002336FFE | SoyBase | E_val: 3.00E-38 | ISS |
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Glyma02g34710 not represented in the dataset |
Glyma02g34710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma02g34710.1 sequence type=CDS gene model=Glyma02g34710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCAAGGAATAGATGTAGAATGCGAGAGGGAATGCGAACCGCCTCTATCAGTATACCTTTATTTTAAAATCGTATTGATTTACCAGCGCCGTTTCTCTCTCAGGGACCACGAGCCTCACTCCAGCGACCTTACCACCTCACCTACGGAAAATTCTTGTGGCCTTCTAGAGCGACCTACGAGTGCGAATTCAAATCAGGTCGAATGGATGGCTTCAGAAAGTTCACCAAATCTGACCGCGACACATACCGCGGGTTGTGGAGCTCCGACAAAAAGCACGGGTAAGGTCAAAAGCGTTATGCGAACGGGGACTTGTACGAGAGGTCGTGGAAGCGGAACGTGCAGGAGGGGGAGGGGCGCTACGTGTGGAAGAATGAGAATGAGTACTACGGGGAGTAGAAGAGTGGCGTCATTTGCCGCCGTGGGACGCTCATTTTGGCTAGCAGGAACCGTTACGAGGGCCAATGGGAGAACGGGGTTCCCAAGGGACAAGGGGTTTTCACCAAGGGAGCTTAAACCGAGTGATTTTGATCTGAAGGAGAAGTTCTGGACAAGGTTTCCGACTGAAGGATCTAAGATTACGCTGCCGGATCAATCAGTGGAGTTCCGCTGGAAGGACTACTGCCCTATGGTTTTTAGGTTAGCCTTTTCCTTCTGGTTTTCTGATTTTATTTTACTCTATAGACCCAATTGGAAGCTTTGTATTGAGGAAGTTATTGTGATGGGCAATCTTTTCTGCTCAGAATATCAAATCCATAAACGATTTGACTTGAAGGGATCTTCACATGGCCAGACAACAGATAAGACCAAGGAGATTGATGAAACTACCACCCTCAAGGACCTGGATCTCAACTTTGTGTTTCGTCTACAAAATAATTGGTTCCAGGATTTCATCAAGTATGTTGGATTTTTTTTGTATTTTCATGTATTTTGGTATAGGGGTGAGCTTAGCTATTATAGGGGGTGTGTTGTTAGAGTTTGTGGTCTTAGTTCCTTTGTCCCACATCGCTTGTGTAGCCGTGGACGTAGGCACATACATTGTGTGCTGAACCATGTTAAACTTTGTGTCTTTTTCTTTCTTCCCTTTATTTCTTTCTCTTCTTTTATTGCTCTATACTAA
>Glyma02g34710.1 sequence type=predicted peptide gene model=Glyma02g34710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSQGIDVECERECEPPLSVYLYFKIVLIYQRRFSLRDHEPHSSDLTTSPTENSCGLLERPTSANSNQVEWMASESSPNLTATHTAGCGAPTKSTGKVKSVMRTGTCTRGRGSGTCRRGRGATCGRMRMSTTGSRRVASFAAVGRSFWLAGTVTRANGRTGFPRDKGFSPRELKPSDFDLKEKFWTRFPTEGSKITLPDQSVEFRWKDYCPMVFRLAFSFWFSDFILLYRPNWKLCIEEVIVMGNLFCSEYQIHKRFDLKGSSHGQTTDKTKEIDETTTLKDLDLNFVFRLQNNWFQDFIKYVGFFLYFHVFWYRGELSYYRGCVVRVCGLSSFVPHRLCSRGRRHIHCVLNHVKLCVFFFLPFISFSSFIALY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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