Glyma02g34563 - SoyBase

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Report for Sequence Feature Glyma02g34563

Feature Type:	gene_model
Chromosome:	Gm02
Start:	38870808
stop:	38873258
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g34563

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
KOG0851	KOG	Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins	JGI		ISS
PF02721	PFAM	Domain of unknown function DUF223	JGI		ISS
UniRef100_G7JK31	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Replication protein A 70 kDa DNA-binding subunit n=1 Tax=Medicago truncatula RepID=G7JK31_MEDTR	SoyBase	E_val: 1.00E-22	ISS
UniRef100_UPI000233A4F2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A4F2 related cluster n=1 Tax=unknown RepID=UPI000233A4F2	SoyBase	E_val: 5.00E-103	ISS

Expression Patterns of Glyma02g34563

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g34563 not represented in the dataset	Glyma02g34563 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g34563 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g190300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g34563

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g34563

Limit To All Plant Sequences

>Glyma02g34563.1   sequence type=CDS   gene model=Glyma02g34563   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACGTTCTCCAAACAAGATAAAGAACATCGATGGCTCAAAAGAAACTCTTAAACTTGCTGTGAGGATCACTGATCTATGGTTTATTGGGACGCCTAACAAATCTGAGCAAGCTGAGATGGTTTTTGTTGACTCTGATGGTGATGAGATCCATGTTGTTTGTAAACAAGACCAACTGAAGTCTTGGAAGATGGACTTGAAGGAAAATTGTACTTATGTCATGCACAATTTTAAAGTGCTAAAAAACAACGGTCAGTACAGAGTCTGTGATCACCAATTTAAATTGGTGTTTATTGGGGTTACTGTTGTAAGGAAGTGTGTTCTAGACGACCTCCCTTTCAGAAAATACAGGTTTGCTGGATTTGCGAATGTTGTGGCTAGCCAGTTTGAACCTGGCCTATTGGTTGGATCTTATCCGCCATCGGTTAACAATTCTTTCAAGGCTTCAAAGTTAGTTATTAACCAACCGGTGATGGAGATTCAAGAATTCAATGAACGGTTTGCAGAGTTGGGCATTGAGGCCTGGTCATTTTTTAAATCCCATGGTGAAGGCAGTTCACAACTTTCAGGTTCTATCCAATTATCATCAAAGGAATCATTCTTTGGAAAGGCTGAGGCAAAGACTATTGTTGAGATTAACACCATCTCTGAAGTGATGATCAACCACAGAGATGAAAGCACAAAATTCCTGCTTTGGGACCGTGAATGCACTGAATTGATTGGTCAATTAGCTGATGCAGTTAATAGGCTTAAAATTGAACAATCCATGTCTGTGACAGCAGACCATGATCCACTGCTTGGGCTCCCATTGACACCTACAAAGCGGCAGACATTTCAAGATTGTGATGATGAAGCAGAGAGCTCTCAAATTTTACCTGCACAGCTTTCATCCAACAAATTAAAAAAACATGATGCAATTTAG

Predicted protein sequences of Glyma02g34563

Limit To All Plant Sequences

>Glyma02g34563.1   sequence type=predicted peptide   gene model=Glyma02g34563   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARSPNKIKNIDGSKETLKLAVRITDLWFIGTPNKSEQAEMVFVDSDGDEIHVVCKQDQLKSWKMDLKENCTYVMHNFKVLKNNGQYRVCDHQFKLVFIGVTVVRKCVLDDLPFRKYRFAGFANVVASQFEPGLLVGSYPPSVNNSFKASKLVINQPVMEIQEFNERFAELGIEAWSFFKSHGEGSSQLSGSIQLSSKESFFGKAEAKTIVEINTISEVMINHRDESTKFLLWDRECTELIGQLADAVNRLKIEQSMSVTADHDPLLGLPLTPTKRQTFQDCDDEAESSQILPAQLSSNKLKKHDAI*

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