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Report for Sequence Feature Glyma02g34490

Feature Type:gene_model
Chromosome:Gm02
Start:38727947
stop:38730846
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma02g34490
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G27290AT Annotation by Michelle Graham. TAIR10: S-locus lectin protein kinase family protein | chr4:13666281-13669202 FORWARD LENGTH=783 SoyBaseE_val: 6.00E-157ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0048544GO-bp Annotation by Michelle Graham. GO Biological Process: recognition of pollen SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
GO:0030246GO-mf Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding SoyBaseN/AISS
KOG1187 KOG Serine/threonine protein kinase JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF703Panther JGI ISS
PF00954PFAM S-locus glycoprotein family JGI ISS
PF07714PFAM Protein tyrosine kinase JGI ISS
PF08276PFAM PAN-like domain JGI ISS
UniRef100_G7JF45UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7JF45_MEDTR SoyBaseE_val: 1.00E-179ISS
UniRef100_I1JGD3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JGD3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma02g34490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g34490 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.02g189800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma02g34490
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma02g34490
>Glyma02g34490.2   sequence type=CDS   gene model=Glyma02g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATGGCTTGCATTCAAGTGGTCACCACAAGTTAAGGCCAACCTCATTTATGACTTCAAGTTTGTTTCCAACAAGGATGAACTTTACTACACATACAACCTTAAGAACTCATCTATGATCTCAAGGTTGGTGCTAAATGCAACAAGCTACGTTCGTAAGCAATATGTATGGAACAAATCAAAGCAAAGATGGGAGGTGTACACTTTAGTACCACTGGACTTATGTGACAGCTATTCCCTTTGTGGAGCTAATGCAAATTGTGTAATTTCATATTCACCAGTGTGCCAATGTTTGCAAGGGTTCAAGTCTAAGTTACCTGAAGAAGGGAGCTCAATGGATTGGTCTCACGGATGCATCCGCAATAAGGAATTAAGGTGTGAGAACAAGAACAATGATGGATTTAACAAATTGACTTTGCTGAAAAAGTCTGACACTACACATAGTTGGCTGGATCAGATAGTTGGGTTAGAGGAATGCAAAGCCAAGTGCTTGGATAACTGTTCTTGTATGGCTTATACGAATTCGGATATCAGTGGACAAGGAAGTGGTTGTGCTATGTGGTTTGGTGATCTAATTGATATTAGACAGTTTGCAGCTGTAGGCCAGATCAGACTTCAATATCAAATCAAATCAAATCAAAATAGTGGAATGCAAGTGGATGATATGGACCTACCAGTTTTTGACCTGTCAACAATAGCTAAGGCCACTAGCAACTTCACAATCAAGAACAAAATTGGAGAAGGTGGTTTTGGATCTGTATACAGGGCTTTCAGCAAGCTCAGGACAAGGATTGACCAAATTCAAGAACGAAGTAAAATTGTTTGCAAAATTCAACACCGCAATCTTGTAAAGCTTCTTGGATGTTGCCTTGAAGGAGAGGAAAAAATGTTGGTTTATGAGTACATGCTTAATGGTAGCTTGGACTCATTTATTTTTGATGAGCAAAGAAGTGGATCACTGGACTGGTCAAAGCACTTCAACATTATATGTGGAATTGCCAAGGGCCTTCTCTTTCTTCATCAGGATTCTAGACTAAGGATTATCCACAAAGATCTCAAAGCAAGTAATGTTTTACTTGACAGTGAGTTGAACCCCAAAATTTCAGAGTTTGGCACGGCTAGAATTTTCGGTGTAGATCAGCAAGAAGGAAACACAAAGAGAATAGTTGGGACATACGGTTACATGGCACCAGAATATGCAACTGATGGGCTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTTTACTGCTGGAGATTATATTAGGAAAAAGAAGCCATGCATGGAAACTATGGAAAGAAGGAAGACCACTAGAACTGATATATAAAAGCATAGAAGACTCGAGTTTTCTATCGCGAATGTTGCATTGCATTCATGTTAATCTCTTGTGTTTTCAACAGAATCCAGAGGACTGGAATGTCTAG
Predicted protein sequences of Glyma02g34490
>Glyma02g34490.2   sequence type=predicted peptide   gene model=Glyma02g34490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEWLAFKWSPQVKANLIYDFKFVSNKDELYYTYNLKNSSMISRLVLNATSYVRKQYVWNKSKQRWEVYTLVPLDLCDSYSLCGANANCVISYSPVCQCLQGFKSKLPEEGSSMDWSHGCIRNKELRCENKNNDGFNKLTLLKKSDTTHSWLDQIVGLEECKAKCLDNCSCMAYTNSDISGQGSGCAMWFGDLIDIRQFAAVGQIRLQYQIKSNQNSGMQVDDMDLPVFDLSTIAKATSNFTIKNKIGEGGFGSVYRAFSKLRTRIDQIQERSKIVCKIQHRNLVKLLGCCLEGEEKMLVYEYMLNGSLDSFIFDEQRSGSLDWSKHFNIICGIAKGLLFLHQDSRLRIIHKDLKASNVLLDSELNPKISEFGTARIFGVDQQEGNTKRIVGTYGYMAPEYATDGLFSVKSDVFSFGVLLLEIILGKRSHAWKLWKEGRPLELIYKSIEDSSFLSRMLHCIHVNLLCFQQNPEDWNV*






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