Glyma02g34180 - SoyBase

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Report for Sequence Feature Glyma02g34180

Feature Type:	gene_model
Chromosome:	Gm02
Start:	38376333
stop:	38377604
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g34180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13420	AT	Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein \| chr5:4302080-4304212 REVERSE LENGTH=438	SoyBase	E_val: 1.00E-135	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0009060	GO-bp	Annotation by Michelle Graham. GO Biological Process: aerobic respiration	SoyBase	N/A	ISS
GO:0009809	GO-bp	Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process	SoyBase	N/A	ISS
GO:0033587	GO-bp	Annotation by Michelle Graham. GO Biological Process: shikimate biosynthetic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004801	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	SoyBase	N/A	ISS
KOG2772	KOG	Transaldolase	JGI		ISS
PTHR10683	Panther	TRANSALDOLASE	JGI		ISS
PF00923	PFAM	Transaldolase	JGI		ISS
UniRef100_B4FRC9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transaldolase 2 n=2 Tax=Zea mays RepID=B4FRC9_MAIZE	SoyBase	E_val: 2.00E-143	ISS
UniRef100_UPI0002336FF7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336FF7 related cluster n=1 Tax=unknown RepID=UPI0002336FF7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma02g34180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma02g34180 not represented in the dataset	Glyma02g34180 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma02g34180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g189100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g34180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g34180

Limit To All Plant Sequences

>Glyma02g34180.2   sequence type=CDS   gene model=Glyma02g34180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAATTGGTAGGGGCAGGGAAGGACATAGAAAGTGCTTATTGGGAATTGGTTGTGAAGGACATACAGGATACTTGCAAACTTCTGGAGCCAATTTACAATGAAACAGATGGGGAAGATGGACATGTATCTCTTGCAATTTCCCCAAAGCTAGCAAATGACACCAAGGGGACAACTGAGGCAGCAAAATGGCTTCATAATATGGTTGGAAGTCCATGTGTTTACATGAAAATTCCTGCCACTGATGAATCCATCTCTTCCATGAAGGAGGTCATTTCTCTGGGGATAAGTGTAAATGCCACTCTCATATTCTGCCTCCCTAAATATGAAGCAGTGATTGATGCTTACTTGGATGGCCTTGAGTCTTGTGGCATGACTGATCTCTCTAAGGTTTCAAGTGCAGCAGCATTCTACATCAGTAGAGTGGATGTTACACTTGACAAGAAACTTGAGCAAATTGGTACTACTGAGGCTCTTGATCTCAAAGGAAAGGGTGCGGTTGCTCAAGCAGTCTTAGCATACCAACTTTACCAGAAAAAATTTTCTGGTCCAAGATGGGAACGCTTGGAGAATAGAGGTGCCAAGAAGCAGAGGTTGATGTGGGCTTCAACAAATGTGAAAAATCCATCTTACCTTGACACATTTTATGTTAATTCTGTTATTGGACCACATACAATTTCAACCTTTTCAGTACAAGCTCTTCATGCATTCATGGACCATGGTATTCTTTCAAGAATGCTTGATGCAAAAGTATCAGAGGCTCAAGACATTTACAATGAAATTGAGAAGTTGGGGATTGATTGGAGTTCTGTTGGATCACAACTGGAACATGAGGTGCTGGATTCTTTCACAAAAAGCTTTGACAATGTGCTTGAATGCATGCAAAAGAAGGCTATGAACATATATTCATTTCAAAAGCACGTTTAA

Predicted protein sequences of Glyma02g34180

Limit To All Plant Sequences

>Glyma02g34180.2   sequence type=predicted peptide   gene model=Glyma02g34180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ELVGAGKDIESAYWELVVKDIQDTCKLLEPIYNETDGEDGHVSLAISPKLANDTKGTTEAAKWLHNMVGSPCVYMKIPATDESISSMKEVISLGISVNATLIFCLPKYEAVIDAYLDGLESCGMTDLSKVSSAAAFYISRVDVTLDKKLEQIGTTEALDLKGKGAVAQAVLAYQLYQKKFSGPRWERLENRGAKKQRLMWASTNVKNPSYLDTFYVNSVIGPHTISTFSVQALHAFMDHGILSRMLDAKVSEAQDIYNEIEKLGIDWSSVGSQLEHEVLDSFTKSFDNVLECMQKKAMNIYSFQKHV*

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